PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_0879 [new locus tag: SAUSA300_RS04740 ]
• pan locus tag^?: SAUPAN003116000
• symbol: SAUSA300_0879
• pan gene symbol^?: —
• synonym:
• product: isopropylmalate synthase-like protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_0879 [new locus tag: SAUSA300_RS04740 ]
• symbol: SAUSA300_0879
• product: isopropylmalate synthase-like protein
• replicon: chromosome
• strand: +
• coordinates: 966420..967565
• length: 1146
• essential: unknown other strains

⊟Accession numbers

• Gene ID: 3914531 NCBI
• RefSeq: YP_493579 NCBI
• BioCyc: see SAUSA300_RS04740
• MicrobesOnline: 1292394 MicrobesOnline

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  ATGATTCGAATTCAAGATAATACAATAAGGGATGGTATGCAACAAAGTAATGTTCGAAAA
  AGTCTAATTATAAAAAAAGAAGTATTGAAACAAATTAACAAGTTAAATATAAATTCTGTT
  GAAGTAGGCATGTGTACAACTATCGAGGATGAATTTAATATTCATCAATTCAGAGACATT
  TTAAGTCCTGAAAAAGAATTAGTAGTATTGACTAGGCTTAATGAAAAAGAAATAAAAAAA
  ATAGTCAAATTGAAAATTCATAATTTAGTGGTAAAAATACTATTGCCAATATCTGACTTG
  CATATAAAAGAAAAGCTTAATTTTTCAAATAAATATTATATTCAGAAAATCAAAGACTGC
  TTGGATATATTAAAGAAAGATAAAAAAGGAGTAGATATTTGTTTTGAAGATGGAACAAGG
  ACTTCTAGAGAAAAATTGAAAGAATACATGGAAATTATTTCAAAATATCAAGTTAGAACA
  GTTACATTTGCGGACACTGTAGGATGTTCGACACCATTAGAATACGGAGATATTTTTAAT
  TACTTTGTAAAAAAATATTCTAACATAATTTTTTCTGCTCATTGTCATAACGATCTAGGG
  TTGGCTACTGCAAATACATTAGCTGCAATTTTAAATGGTGCAAAGCAAATAGAAACTACA
  TTTTTGAGAATTGGTGAGAGAGCGGGTAATGCTCCTATTGAGGAAATAATTACTATTTTG
  ACAAAAAAACAAATAGAAAGTACGGAATTCACTTTACCCGACGTATATAAAACTAGTATT
  AATATTTCTAAAATTCTCGATTTTCAAATATCAGAAAACAAACCTATAATTGGTGAAAAT
  ATATTTAAACATGAATCAGGAATTCATCAAGATGGTACTAAAAAAAATATAAATATGTAT
  CAATATTTAGTTCCTAGTGATTTAGGATTGAAAAATTCACAAGTTGTTCAGTTTCCAATA
  AGTAATATTTCTAGTAAGAAAATCTTGCACAATAAATTTAAATCAATAGTTAACACTGAA
  GAAATTGATGAAAATATTTCTTTCTATAAACTTGTGAACAAGTTTTCACCTGAAGTAGCA
  CCTGAAGATACAGTGGATTTACTTCAGATAATAAAAAGGAGGAGTAAAGATGGAAATTTT
  AAATGA
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⊟Protein

⊟General

• locus tag: SAUSA300_0879 [new locus tag: SAUSA300_RS04740 ]
• symbol: SAUSA300_0879
• description: isopropylmalate synthase-like protein
• length: 381
• theoretical pI: 9.29629
• theoretical MW: 43773.5
• GRAVY: -0.320735

⊟Function

• TIGRFAM:
  Metabolism Amino acid biosynthesis Pyruvate family 2-isopropylmalate synthase (TIGR00973; EC 2.3.3.13; HMM-score: 222.9)
  Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Other homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 217.3)
  Metabolism Central intermediary metabolism Nitrogen fixation homocitrate synthase (TIGR02660; EC 2.3.3.14; HMM-score: 217.3)
  isopropylmalate/citramalate/homocitrate synthases (TIGR02090; HMM-score: 197.4)
  and 6 more
  homocitrate synthase (TIGR02146; EC 2.3.3.14; HMM-score: 168.5)
  Unknown function General citramalate synthase (TIGR00977; EC 2.3.1.182; HMM-score: 105)
  Metabolism Energy metabolism Other 4-hydroxy-2-oxovalerate aldolase (TIGR03217; EC 4.1.3.39; HMM-score: 61.1)
  Metabolism Amino acid biosynthesis Pyruvate family 2-isopropylmalate synthase (TIGR00970; EC 2.3.3.13; HMM-score: 52.4)
  Metabolism Transport and binding proteins Cations and iron carrying compounds oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 26.6)
  Metabolism Energy metabolism Other oxaloacetate decarboxylase alpha subunit (TIGR01108; EC 4.1.1.3; HMM-score: 26.6)
• TheSEED  :
  • FIG01108309: hypothetical protein
• PFAM:
  TIM_barrel (CL0036) HMGL-like; HMGL-like (PF00682; HMM-score: 184.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• LocateP: Intracellular
  • Prediction by SwissProt Classification: Cytoplasmic
  • Pathway Prediction: No pathway
  • Intracellular possibility: 1
  • Signal peptide possibility: -1
  • N-terminally Anchored Score: 1
  • Predicted Cleavage Site: No CleavageSite
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.00458
  • TAT(Tat/SPI): 0.000213
  • LIPO(Sec/SPII): 0.000394
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 87160295 NCBI
• RefSeq: YP_493579 NCBI
• UniProt: A0A0H2XES8 UniProt

⊟Protein sequence

• MIRIQDNTIRDGMQQSNVRKSLIIKKEVLKQINKLNINSVEVGMCTTIEDEFNIHQFRDILSPEKELVVLTRLNEKEIKKIVKLKIHNLVVKILLPISDLHIKEKLNFSNKYYIQKIKDCLDILKKDKKGVDICFEDGTRTSREKLKEYMEIISKYQVRTVTFADTVGCSTPLEYGDIFNYFVKKYSNIIFSAHCHNDLGLATANTLAAILNGAKQIETTFLRIGERAGNAPIEEIITILTKKQIESTEFTLPDVYKTSINISKILDFQISENKPIIGENIFKHESGIHQDGTKKNINMYQYLVPSDLGLKNSQVVQFPISNISSKKILHNKFKSIVNTEEIDENISFYKLVNKFSPEVAPEDTVDLLQIIKRRSKDGNFK

⊟Experimental data

• experimentally validated: data available for NCTC8325
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

• MicrobesOnline: SAUSA300_0879 > SAUSA300_0880 > SAUSA300_0881 > SAUSA300_0882

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications