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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_0959 [new locus tag: SAUSA300_RS05155 ]
  • pan locus tag?: SAUPAN003266000
  • symbol: fmt
  • pan gene symbol?: fmtA
  • synonym:
  • product: fmt protein

⊟Additional information (user-provided)[edit | edit source]

fmtA: teichoic acid D-amino acid esterase FmtA

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_0959 [new locus tag: SAUSA300_RS05155 ]
  • symbol: fmt
  • product: fmt protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1050992..1052185
  • length: 1194
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAAATTTAATAAAGTAAAACTAGTTATACATGCGTGTGTACTATTATTTATCATTATT
    TCTATAGCGTTAATTTTTCATCGATTACAGACGAAGACACATTCTATAGACCCAATACAT
    AAGGAAACAAAATTATCAGACAATGAAAAATATTTAGTGGATCGTAATAAGGAAAAGGTT
    GCGCCGTCTAAACTAAAAGAGGTATATAATAGCAAGGATCCTAAATATAAGAAAATTGAC
    AAGTATTTACAAAGTTCATTATTTAACGGTTCAGTAGCTATATATGAAAATGGCAAATTG
    AAAATGAGTAAAGGTTATGGATATCAAGATTTTGAAAAAGGTATTAAAAACACACCGAAT
    ACGATGTTTTTAATAGGTTCAGCTCAAAAATTTTCAACAGGGTTACTGTTAAAACAGTTA
    GAAGAAGAACATAAAATAAATATCAATGATCCAGTAAGTAAATACCTTCCATGGTTTAAA
    ACATCTAAGCCTATCCCATTGAAAGATTTAATGTTGCATCAAAGTGGATTATATAAATAT
    AAATCCTCAAAAGATTATAAAAATTTAGATCAAGCAGTTAAAGCGATTCAAAAACGTGGT
    ATTGATCCTAAGAAATACAAAAAGCATATGTATAACGATGGGAATTATTTAGTACTTGCG
    AAAGTAATTGAAGAAGTTACAGGTAAATCTTATGCTGAGAATTATTATACAAAAATAGGA
    GATCCTTTAAAACTTCAGCACACAGCATTTTATGATGAACAACCTTTTAAAAAATATCTA
    GCAAAAGGTTATGCTTATAATAGTACAGGACTTTCATTCTTAAGACCTAATATTTTGGAC
    CAATACTATGGTGCAGGTAATTTATATATGACACCAACAGATATGGGTAAATTAATTACT
    CAAATACAACAATATAAATTATTCAGTCCTAAAATAACCAATCCATTATTACATGAGTTT
    GGTACGAAAAAGTATCCAGATGAATATCGATATGGTTTCTATGCTAAGCCAACATTGAAT
    AGACTTAACGGGGGATTCTTTGGACAAGTCTTTACTGTTTACTATAATGATAAGTATGTA
    GTTGTACTTGCATTAAATGTAAAAGGAAACAATGAAGTTCGAATCAAACATATTTATAAT
    GATATTTTAAAACAAAATAAACCTTACAATACGAAGGGTGTTATTGTTCAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1194


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_0959 [new locus tag: SAUSA300_RS05155 ]
  • symbol: Fmt
  • description: fmt protein
  • length: 397
  • theoretical pI: 10.1143
  • theoretical MW: 46067.1
  • GRAVY: -0.561713

⊟Function[edit | edit source]

  • reaction:
    EC 3.5.2.6?  ExPASy
    Beta-lactamase A beta-lactam + H2O = a substituted beta-amino acid
  • TIGRFAM:
  • TheSEED  :
    • FmtA protein involved in methicillin resistance
    Regulation and Cell signaling Regulation and Cell signaling - no subcategory Cell envelope-associated LytR-CpsA-Psr transcriptional attenuators  FmtA protein involved in methicillin resistance
  • PFAM:
    Beta-lactamase (CL0013) Beta-lactamase; Beta-lactamase (PF00144; HMM-score: 203.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.8453
    • Cell wall & surface Score: 0.0017
    • Extracellular Score: 0.1529
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: 0.5
    • N-terminally Anchored Score: 2
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.460433
    • TAT(Tat/SPI): 0.001127
    • LIPO(Sec/SPII): 0.024289
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKFNKVKLVIHACVLLFIIISIALIFHRLQTKTHSIDPIHKETKLSDNEKYLVDRNKEKVAPSKLKEVYNSKDPKYKKIDKYLQSSLFNGSVAIYENGKLKMSKGYGYQDFEKGIKNTPNTMFLIGSAQKFSTGLLLKQLEEEHKININDPVSKYLPWFKTSKPIPLKDLMLHQSGLYKYKSSKDYKNLDQAVKAIQKRGIDPKKYKKHMYNDGNYLVLAKVIEEVTGKSYAENYYTKIGDPLKLQHTAFYDEQPFKKYLAKGYAYNSTGLSFLRPNILDQYYGAGNLYMTPTDMGKLITQIQQYKLFSPKITNPLLHEFGTKKYPDEYRYGFYAKPTLNRLNGGFFGQVFTVYYNDKYVVVLALNVKGNNEVRIKHIYNDILKQNKPYNTKGVIVQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

[1]

  1. ↑ Muhammad M Rahman, Howard N Hunter, Shamina Prova, Vidhu Verma, Aneela Qamar, Dasantila Golemi-Kotra
    The Staphylococcus aureus Methicillin Resistance Factor FmtA Is a d-Amino Esterase That Acts on Teichoic Acids.
    mBio: 2016, 7(1);e02070-15
    [PubMed:26861022] [WorldCat.org] [DOI] (I e)
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