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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1100 [new locus tag: SAUSA300_RS05960 ]
  • pan locus tag?: SAUPAN003488000
  • symbol: SAUSA300_1100
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1100 [new locus tag: SAUSA300_RS05960 ]
  • symbol: SAUSA300_1100
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1204161..1204562
  • length: 402
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGGATATTCCAAAAATCACGACATTTTTAATGTTTAATAACCAAGCTGAAGAAGCTGTT
    AAACTATACACAAGCTTATTTGAAGATAGTGAGATTATAACAATGGCTAAGTATGGTGAA
    AATGGACCTGGTGATCCCGGGACTGTACAACACTCAATATTTACATTAAATGGACAAGTA
    TTCATGGCGATTGATGCTAATAGTGGCACAGAATTACCAATGAATCCTGCGATTTCATTA
    TTTGTTACAGTAAAAGATACTATTGAAATGGAACGACTATTTAATGGATTAAAAGATGAA
    GGTGCCATTTTAATGCCAAAAACGAATATGCCACCATACAGAGAGTTTGCTTGGGTTCAA
    GATAAGTTTGGAGTAAGTTTTCAATTAGCATTACCTGAGTAA
    60
    120
    180
    240
    300
    360
    402


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1100 [new locus tag: SAUSA300_RS05960 ]
  • symbol: SAUSA300_1100
  • description: hypothetical protein
  • length: 133
  • theoretical pI: 4.14219
  • theoretical MW: 14859
  • GRAVY: -0.0864662

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • PhnB-like protein PA1358
  • PFAM:
    Glyoxalase (CL0104) 3-dmu-9_3-mt; 3-demethylubiquinone-9 3-methyltransferase (PF06983; HMM-score: 134.5)
    and 1 more
    Glyoxalase; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (PF00903; HMM-score: 15.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9958
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.004
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.009233
    • TAT(Tat/SPI): 0.000154
    • LIPO(Sec/SPII): 0.000659
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MDIPKITTFLMFNNQAEEAVKLYTSLFEDSEIITMAKYGENGPGDPGTVQHSIFTLNGQVFMAIDANSGTELPMNPAISLFVTVKDTIEMERLFNGLKDEGAILMPKTNMPPYREFAWVQDKFGVSFQLALPE

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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