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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1478 [new locus tag: SAUSA300_RS08070 ]
- pan locus tag?: SAUPAN004091000
- symbol: SAUSA300_1478
- pan gene symbol?: —
- synonym:
- product: putative lipoprotein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1478 [new locus tag: SAUSA300_RS08070 ]
- symbol: SAUSA300_1478
- product: putative lipoprotein
- replicon: chromosome
- strand: -
- coordinates: 1632071..1632427
- length: 357
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3913471 NCBI
- RefSeq: YP_494173 NCBI
- BioCyc: see SAUSA300_RS08070
- MicrobesOnline: 1292993 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGAGGCGATGGTTTGTATTAATTTTAGGATTAGTTATATTATTATCTGCATGTGGTCAG
AAATATGATAAAGAAATTGATGAAGTTACAAAGTTAGAAAAAGAAAGTATTCAAGATGTG
AAAAATACAAAGAAGTATAAAAATGTTGAGCGGTCAAAAAGTTATTATAAGATTTATAAT
GATGGTGAGGTTATTATAATGACTTATATGCCTTTTAAAGATAGTAATACAAAAGTTTCA
AGAGTATATAAAATAAATCAGACTAGCGATAAATATGAAGAAGATTCTAATATTGATGCT
GAAAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAA60
120
180
240
300
357
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1478 [new locus tag: SAUSA300_RS08070 ]
- symbol: SAUSA300_1478
- description: putative lipoprotein
- length: 118
- theoretical pI: 8.84139
- theoretical MW: 14098
- GRAVY: -0.94322
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- hypothetical protein transposon-related
- ⊞PFAM: NTF2 (CL0051) DUF4467; Domain of unknown function with cystatin-like fold (DUF4467) (PF14729; HMM-score: 31.5)and 2 more
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MRRWFVLILGLVILLSACGQKYDKEIDEVTKLEKESIQDVKNTKKYKNVERSKSYYKIYNDGEVIIMTYMPFKDSNTKVSRVYKINQTSDKYEEDSNIDAEKFEKDNKPVYEENNMKK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available