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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS08070 [old locus tag: SAUSA300_1478 ]
- pan locus tag?: SAUPAN004091000
- symbol: SAUSA300_RS08070
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS08070 [old locus tag: SAUSA300_1478 ]
- symbol: SAUSA300_RS08070
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1632071..1632427
- length: 357
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1632071..1632427) NCBI
- BioCyc: SAUSA300_RS08070 BioCyc
- MicrobesOnline: see SAUSA300_1478
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301ATGAGGCGATGGTTTGTATTAATTTTAGGATTAGTTATATTATTATCTGCATGTGGTCAG
AAATATGATAAAGAAATTGATGAAGTTACAAAGTTAGAAAAAGAAAGTATTCAAGATGTG
AAAAATACAAAGAAGTATAAAAATGTTGAGCGGTCAAAAAGTTATTATAAGATTTATAAT
GATGGTGAGGTTATTATAATGACTTATATGCCTTTTAAAGATAGTAATACAAAAGTTTCA
AGAGTATATAAAATAAATCAGACTAGCGATAAATATGAAGAAGATTCTAATATTGATGCT
GAAAAGTTTGAGAAAGATAATAAACCAGTTTATGAAGAAAATAATATGAAAAAATAA60
120
180
240
300
357
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS08070 [old locus tag: SAUSA300_1478 ]
- symbol: SAUSA300_RS08070
- description: hypothetical protein
- length: 118
- theoretical pI: 8.84139
- theoretical MW: 14098
- GRAVY: -0.94322
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_1478
- PFAM: NTF2 (CL0051) DUF4467; Domain of unknown function with cystatin-like fold (DUF4467) (PF14729; HMM-score: 31.5)and 2 moreLppaM (CL0421) LPAM_2; Prokaryotic lipoprotein-attachment site (PF13627; HMM-score: 19.2)no clan defined DUF2290; Uncharacterized conserved protein (DUF2290) (PF10053; HMM-score: 15.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 17 aa
- SP(Sec/SPI): 0.000512
- TAT(Tat/SPI): 0.0001
- LIPO(Sec/SPII): 0.999033
- Cleavage Site: CS pos: 17-18. LSA-CG. Pr: 0.9999
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 447178123 NCBI
- RefSeq: WP_001255379 NCBI
- UniProt: see SAUSA300_1478
⊟Protein sequence[edit | edit source]
- MRRWFVLILGLVILLSACGQKYDKEIDEVTKLEKESIQDVKNTKKYKNVERSKSYYKIYNDGEVIIMTYMPFKDSNTKVSRVYKINQTSDKYEEDSNIDAEKFEKDNKPVYEENNMKK
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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