From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1606 [new locus tag: SAUSA300_RS08750 ]
  • pan locus tag?: SAUPAN004258000
  • symbol: SAUSA300_1606
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1606 [new locus tag: SAUSA300_RS08750 ]
  • symbol: SAUSA300_1606
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1758230..1758703
  • length: 474
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGAGATTGATATTTAGTATGATTAAAAACATTATAGCAGTAATAGCAATTGTGATAATT
    GTTTATATCGCCTTGAAATACGCACCTTTTTTAAAAGAACAAGATTGGAATCCTGTAAAT
    CACGATAATGATCAAATGAATCAAGTTACGCAACCCACTAATGATGCCCAACATGTTTAT
    GTAAGTGGTGAGAAATATTCATTAAAAGAAAATGATTTAATAAAGAATGTACCATTAAGC
    CAAATTAAAAATGTATTTAAAATGATAGATAAACAAGAGTTTATGGCTGTGTCTGGAATG
    AATCGCATGGCTTATAATGATCAATATATTATAGGTCAAAGAGGAGACGAATTTATTCTT
    TATAAATTTGGAGATGAGTCAATGCGTGTTTACAATACTGAATTTGAAATGCAACAAGAC
    TTAAATGAATTAGGGCAAAATTTACAACTAAAATCTGAAAATGCTTATCAATAG
    60
    120
    180
    240
    300
    360
    420
    474

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1606 [new locus tag: SAUSA300_RS08750 ]
  • symbol: SAUSA300_1606
  • description: hypothetical protein
  • length: 157
  • theoretical pI: 4.76604
  • theoretical MW: 18384.9
  • GRAVY: -0.390446

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • FIG01108101: hypothetical protein
  • PFAM:
    no clan defined DUF4930; Domain of unknown function (DUF4930) (PF16284; HMM-score: 226.5)
    and 2 more
    Sigma_reg_N; Sigma factor regulator N-terminal (PF13800; HMM-score: 14.5)
    DUF3975; Protein of unknown function (DUF3975) (PF13126; HMM-score: 13.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helix: 1
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 3
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.222384
    • TAT(Tat/SPI): 0.000427
    • LIPO(Sec/SPII): 0.012959
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRLIFSMIKNIIAVIAIVIIVYIALKYAPFLKEQDWNPVNHDNDQMNQVTQPTNDAQHVYVSGEKYSLKENDLIKNVPLSQIKNVFKMIDKQEFMAVSGMNRMAYNDQYIIGQRGDEFILYKFGDESMRVYNTEFEMQQDLNELGQNLQLKSENAYQ

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_1606&oldid=99113"