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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1643 [new locus tag: SAUSA300_RS15380 ]
- pan locus tag?: SAUPAN004323000
- symbol: SAUSA300_1643
- pan gene symbol?: —
- synonym:
- product:
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: pseudogene
- locus tag: SAUSA300_1643 [new locus tag: SAUSA300_RS15380 ]
- symbol: SAUSA300_1643
- product:
- replicon: chromosome
- strand: -
- coordinates: 1802471..1804122
- length: 1652
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3914673 NCBI
- RefSeq:
- BioCyc: see SAUSA300_RS15380
- MicrobesOnline: 1293158 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1621ATGTATAAAATTTATAACATGACCCAACTTACACTACCAATAGAAACCTCTGTTAGAATT
CCTCAAAATGATATTTCGCGATATGTTAATGAAATTGTTGAAACGATACCTGATAGCGAA
TTCGATGAATTCAGACATCATCGTGGCGCAACATCCTATCATCCAAAAATGATGTTAAAA
ATCATCTTATATGCATATACTCAATCTGTATTTTCTGGTCGTAGAATAGAAAAATTACTT
CATGACAGTATTCGAATGATGTGGTTAGCTCAAGATCAAACACCTTCTTATAAAACTATT
AATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTC
CATAGTCAATGTTTAAAGCAAAATCTTATTGATAATAATTCAATTTTTATTGATGGTACA
AAAGTAGAAGCTAATGCCAATAGATATACATTTGTGTGGAAGAAAAGTATTCAAAATCAC
GAATCGAAATTGAACGAAAATTCAAAAACATTATATCGTGACTTAGTTGAAGAAAAAATA
ATACCAGAGATAAAAGAAGATGGAGATAGCGATTTAACAATAGAAGAAATAGATTTAATT
GGTAGTCATTTAGATAAAGAAATCGAAGATTTAAATCATTCTATTGAGAACGAAGATTGT
GCTCAAATTAGAAAACAGACCCGTAAAAAAATAACTGAGATTAAGAAGTTCAAAAAGAAA
TTTGATGATTATTCCGAAAGAAAAAATAAATATGAAGAACAAAAATCGATTCTTAAAGAT
AGAAATAGTTTTTCTAAAACTGATCTGATCATGATGCAACTTTTATGAGAATGAAGGAAG
ACCATATGAAAAATGGCCAACTTAAGCCAGGATACAATTTACAAATAGCGACAAATTCTC
AATTTGTTTTATCCTATGACCTATTTCAAAACCCAACAGATACTAGAACATTAATCCCAT
TTTTAACAATGATTCAAAATACCTTCGGTTATTTACCAGAGTATATTGTAGCTGATGCAG
GTTATGGTAGTGAGCAAAACTATATGGCTATTATAGATGATTTTAATAAAACGCCACTTA
TTACGTATGGCATGTTTATTAAAGATAAAACTAGAAAGTTTAAAAGTGGCATTTTCAACA
CTCAAAATTGGAAATATGACGAACTTAATAATGAATTTATATGTCCTAATAACAAAAGAA
TAGGTTTTAAAAGATATGCATACCGTAATGATAGATATGGTTTTAAACGAGACTTCAAAC
TATATGAATGTGATGACTGTTCATCATGTTCTTTGAGACATCAATGCATGAAACCAAATT
CGAAATCCAATAAGAAAATCATGAAGAATTATAATTGGGAATACTTTAAAGTCCAAATTA
ATCAAAAGCTTTCTGAACCAGAAACGAAAAACATCTATAGTCAAAGAAAAATTGATGTAG
AGCCTGCTTTTGGATTTATGAAGGCTATTTTGGGTTTCACTCGAATGTCAGTTCGAGGAA
TAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTGATGGCACTTAATATAAGGAAAATAG
CAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAA
TTAATAGAAATCAGCTTTTTTACATTGCCTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1643 [new locus tag: SAUSA300_RS15380 ]
- symbol: SAUSA300_1643
- description:
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for NCTC8325
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- LocateP:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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