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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1928 [new locus tag: SAUSA300_RS10580 ]
- pan locus tag?: SAUPAN005045000
- symbol: SAUSA300_1928
- pan gene symbol?: —
- synonym:
- product: phi77 ORF002-like protein, phage minor structural protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1928 [new locus tag: SAUSA300_RS10580 ]
- symbol: SAUSA300_1928
- product: phi77 ORF002-like protein, phage minor structural protein
- replicon: chromosome
- strand: -
- coordinates: 2091496..2095281
- length: 3786
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3914635 NCBI
- RefSeq: YP_494579 NCBI
- BioCyc: see SAUSA300_RS10580
- MicrobesOnline: 1293443 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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3781GTGATACATGTTTTAGATTTTAACGACAAGATTATAGATTTCCTTTCTACTGATGACCCT
TCCTTAGTTAGAGCGATTCATAAACGTAATGTTAATGACAATTCAGAAATGCTTGAACTG
CTCATATCATCAGAAAGAGCTGAAAAGTTCCGTGAACGACATCGTGTTATTATAAGGGAT
TCAAACAAACAATGGCGTGAATTTATTATTAACTGGGTTCAAGATACGATGGACGGCTAC
ACAGAGATAGAATGTATAGCGTCTTATCTTGCTGATATAACAACAGCTAAACCGTATGCA
CCAGGCAAATTTGAGAAAAAGACAACTTCAGAAGCATTGAAAGATGTGTTGAGCGATACA
GGTTGGGAAGTTTCTGAACAAACCGAATACGATGGCTTACGTACTACGTCATGGACTTCT
TATCAAACTAGATATGAAGTTTTAAAGCAATTATGTACAACCTATAAAATGGTATTGGAT
TTTTATATAGAGCTTAGTTCTAATACCGTCAAAGGTAGATATGTGGTACTCAAAAAGAAA
AACAGCTTATTCAAAGGTAAAGAAATTGAGTATGGTAAAGATTTGGTTGGGTTAACTAGG
AAGATTGATATGTCAGAAATCAAAACAGCATTAATTGCTGTGGGACCCGAAAATGACAAA
GGAAAGCGTTTAGAGCTAGTTGTGACAGATGACGAAGCGCAAAGTCAATTCAACCTACCT
ATGCGCTATATTTGGGGGATATATGAACCACAATCAGATGATCAAAATATGAATGAAACA
CGATTAAGTTCTTTAGCCAAAACAGAGTTAAATAAACGTAAGTCGGCAGTTATGTCATAT
GAGATTACTTCTACTGATTTGGAAGTTACGTATCCGCACGAGATTATATCAATTGGCGAT
ACAGTCAGAGTAAAACATAGAGATTTTAACCCGCCATTGTATGTAGAGGCAGAAGTTATT
GCTGAAGAATATAACATAATTTCAGAAAATAGCACATATACATTCGGTCAACCTAAAGAG
TTCAAAGAATCAGAATTACGAGAAGAGTTTAACAAGCGATTAAACCTAATACACCAAAAA
TTAAACGACAATATTAGCAATATCAATACTATAGTAAAAGATGTTGTAGATGGTGAATTA
GAATACTTTGAACGCAAAATTCATAAAAGTGATACACCGCCAGAAAATCCAGTCAATGAT
ACGCTTTGGTATGATACAAGTAACCCTGATGTTGCTGTCTTGCGTAGATATTGGAATGGT
CGATGGATTGAAGCAACACCAAATGATGTTGAAAAATTAGGTGGTATAACAAGAGAGAAA
GCGCTATTCAGTGAATTAAACAATATTTTTATTAATTTATCTATACAACACGCTAGTCTT
TTGTCAGAAGCTACAGAATTACTGAATAGCGAGTACTTAGTAGATAATGATTTGAAAGCG
GACTTACAAGCAAGTTTAGACGCTGTGATTGATGTTTATAATCAAATTAAAAATAATTTA
GAATCTATGACACCCGAAACTGCAACGATTGGTCGGTTGGTAGATACAAAAACTTTATTT
CTTGAGTATAGAAAGAAATTACAAGATGTTTATACAGATGTAGAAGATGTCAAAATCGCC
ATTTCAGATAGATTTAAATTATTACAGTCACAATACACTGATGAAAAATATAAAGAAGCG
TTGGAAATAATAGCAACAAAATTTGGTTTAACGGTGAATGAAGATTTGCAGTTAGTCGGA
GAACCTAATGTTGTTAAATCAGCTATTGAAGCAGCTAGAGAATCCACAAAAGAACAATTA
CGTGACTATGTAAAAACATCGGACTATAAAACAGACAAAGACGGTATTGTTGAACGTTTA
GATACTGCTGAAGCTGAGAGAACGACTTTAAAAGGTGAAATCAAAGATAAAGTTACGTTA
AACGAATATCGAAACGGATTGGAAGAACAAAAACAATATACTGATGACCAGTTAAGTGAT
TTGTCCAATAATCCTGAGATTAAAGCAAGTATTGAACAAGCAAATCAAGAAGCGCAAGAA
GCTTTAAAATCATACATTGATGCTCAAGATAATCTTAAAGAGAAGGAATCGCAAGCGTAT
GCTGATGGTAAAATTTCGGAAGAAGAGCAACGCGCTATACAAGATGCTCAAGCTAAACTT
GAAGAGGCAAAACAAAACGCAGAACTAAAGGCTAGAAACGCTGAAAAGAAAGCTAATGCT
TATACAGACAACAAGGTCAAAGAAAGCACAGATGCACAGAGGAGAACACTGACTCGCTAT
GGTTCTCAAATTATACAAAATGGTAAGGAAATCAAATTAAGAACTACTAAAGAAGAGTTT
AATGCAACCAATCGTACACTTTCAAATATATTAAACGAGATTGTCCAAAACGTTACAGAT
GGAACAACAATCAGATATGATGATAACGGAGTGGCTCAAGCTTTAAATGTGGGGCCACGT
GGTATTAGATTAAATGCTGATAAAATTGATATTAACGGTAATAGAGAAATAAACCTTCTT
ATCCAAAATATGCGAGATAAAGTAGATAAAACCGATATTGTCAACAGCCTTAATTTATCA
AGAGAGGGTCTTGATATCAATGTTAATAGAATTGGAATTAAAGGCGGTAACAATAACAGA
TATGTTCAAATACAGAATGATTCTATTGAACTAGGTGGTATTGTGCAACGAACTTGGAAA
GGCAAACGATCAACCGATGATATATTCACACGTCTTAAAGATGGACATCTAAGGTTTAGA
AATAATACCGCAGGCGGTTCACTTTATATGTCACATTTTGGTATTTCAACATATATTGAT
GGAGAAGGCGAAGACGGAGGTTCATCCGGTACTATTCAATGGTGGGATAAAACTTACAGT
GATAGCGGTATGAATGGCATAACAATCAATTCCTATGGTGGTGTCGTTGCACTAACGTCA
GATAATAATCGGGTTGTTCTGGAGTCTTACGCTTCATCGAATATCAAAAGCAAACAGGCA
CCGGTGTATTTATATCCAAACACAGACAAAGTGCCTGGATTAAACCGATTTGCATTCACG
CTGTCTAATGCAGATAATGCTTATTCGAGTGACGGTTATATTATGTTTGGTTCTGATGAG
AACTATGATTACGGTGCGGGTATCAGGTTTTCTAAAGAAAGAAATAAAGGTCTTGTTCAA
ATTGTTAATGGACGATATGCAACAGGTGGAGATACAACAATCGAAGCAGGGTATGGCAAA
TTTAATATGCTGAAACGACGTGATGGTAATAGGTATATTCATATACAGAGTACAGACCTA
CTGTCTGTAGGTTCAGATGATGCAGGAGATAGGATAGCTTCTAACTCAATTTATAGACGT
ACTTATTCGGCCGCAGCTAATTTGCATATTACTTCTGCTGGCACAATTGGGCGTTCGACA
TCAGCGCGTAAATACAAGTTATCTATCGAAAATCAATATAACGATAGAGATGAACAACTG
GAACATTCAAAAGCTATTCTTAACTTACCTATTAGAACGTGGTTTGATAAAGCTGAGTCT
GAAATTTTAGCTAGAGAGCTGAGAGAAGATAGAAAATTATCGGAAGACACCTATAAACTT
GATAGATACGTAGGTTTGATTGCTGAAGAGGTGGAGAATTTAGGATTAAAAGAGTTTGTC
ACGTATGATGACAAAGGAGAAATTGAAGGTATAGCGTATGATCGTCTATGGATTCATCTT
ATCCCTGTTATCAAAGAACAACAACTAAGAATCAAGAAATTGGAGGAGTCAAAGAATGCA
GGATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1928 [new locus tag: SAUSA300_RS10580 ]
- symbol: SAUSA300_1928
- description: phi77 ORF002-like protein, phage minor structural protein
- length: 1261
- theoretical pI: 4.89409
- theoretical MW: 143704
- GRAVY: -0.696431
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001686
- TAT(Tat/SPI): 0.000088
- LIPO(Sec/SPII): 0.000339
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MIHVLDFNDKIIDFLSTDDPSLVRAIHKRNVNDNSEMLELLISSERAEKFRERHRVIIRDSNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPGKFEKKTTSEALKDVLSDTGWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMVLDFYIELSSNTVKGRYVVLKKKNSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPENDKGKRLELVVTDDEAQSQFNLPMRYIWGIYEPQSDDQNMNETRLSSLAKTELNKRKSAVMSYEITSTDLEVTYPHEIISIGDTVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYTFGQPKEFKESELREEFNKRLNLIHQKLNDNISNINTIVKDVVDGELEYFERKIHKSDTPPENPVNDTLWYDTSNPDVAVLRRYWNGRWIEATPNDVEKLGGITREKALFSELNNIFINLSIQHASLLSEATELLNSEYLVDNDLKADLQASLDAVIDVYNQIKNNLESMTPETATIGRLVDTKTLFLEYRKKLQDVYTDVEDVKIAISDRFKLLQSQYTDEKYKEALEIIATKFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQLRDYVKTSDYKTDKDGIVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLSNNPEIKASIEQANQEAQEALKSYIDAQDNLKEKESQAYADGKISEEEQRAIQDAQAKLEEAKQNAELKARNAEKKANAYTDNKVKESTDAQRRTLTRYGSQIIQNGKEIKLRTTKEEFNATNRTLSNILNEIVQNVTDGTTIRYDDNGVAQALNVGPRGIRLNADKIDINGNREINLLIQNMRDKVDKTDIVNSLNLSREGLDINVNRIGIKGGNNNRYVQIQNDSIELGGIVQRTWKGKRSTDDIFTRLKDGHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYSDSGMNGITINSYGGVVALTSDNNRVVLESYASSNIKSKQAPVYLYPNTDKVPGLNRFAFTLSNADNAYSSDGYIMFGSDENYDYGAGIRFSKERNKGLVQIVNGRYATGGDTTIEAGYGKFNMLKRRDGNRYIHIQSTDLLSVGSDDAGDRIASNSIYRRTYSAAANLHITSAGTIGRSTSARKYKLSIENQYNDRDEQLEHSKAILNLPIRTWFDKAESEILARELREDRKLSEDTYKLDRYVGLIAEEVENLGLKEFVTYDDKGEIEGIAYDRLWIHLIPVIKEQQLRIKKLEESKNAG
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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