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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1929 [new locus tag: SAUSA300_RS10585 ]
  • pan locus tag?: SAUPAN005046000
  • symbol: SAUSA300_1929
  • pan gene symbol?: —
  • synonym:
  • product: phi77 ORF004-like protein phage tail component

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1929 [new locus tag: SAUSA300_RS10585 ]
  • symbol: SAUSA300_1929
  • product: phi77 ORF004-like protein phage tail component
  • replicon: chromosome
  • strand: -
  • coordinates: 2095297..2096781
  • length: 1485
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGATAGACACTATTAAAGTGAACAACAAAACAATTCCTTGGTTGTATGTCGAAAGAGGG
    TTTGAAATACCCTCTTTTAATTATGTTTTAAAAACTGAAAATGTAGATGGACGTTCGGGG
    TCTATATATAAAGGGCGTAGGCTTGAATCTTATAGTTTTGATATACCTTTGGTGGTACGT
    AATGACTATTTATCTCACAACGGCTTTAAAACACATGATGACGTCTTGAATGAATTAGTA
    AAGTTTTTTAACTACGAGGAACAAGTTAAATTACAATTCAAATCTAAAGATTGGTACTGG
    AACGCTTATTTTGAAGGACCAATAAAGCTGCACAAAGAATTTGCAATACCTGTTAAGTTC
    ACTATCAAAGTAGTACTAACAGACCCTTACAAATATTCAGTAACAGGATATAAAAATACT
    GCGATTTCAGACCAAGTTTCAGTTGTAAATAGTGGGACTGCTGACACTCCTTTAATTGTT
    GAAGCCCGAGCAATTAAACCATCTAGTTACTTTATGATCACTAAAAATGATGAAGATTAT
    TTTATGGTTGGTGATGATGAGGTAACCAAAGAAGTTAAGGATTACATGCCTCCTGTTTAT
    CATAGTGAGTTTCGTGATTTCAAAGGTTGGACTAAGATGATTACTGAAGATATTCCAAGT
    AATGATTTAGGTGGTAAAGTCGGCGGTGACTTTGTGATATCCAATCTTGGCGAAGGATAT
    AAAGCAACTAATTTTTCTGATGCAAAAGGTTGGGTTGGTGCTGGCACGAAACGAGGGCTC
    CCTAAAGCGATGACAGATTTTCAAATTACCTATAAATGTATTGTTGAACAAAAAGGTAAA
    GGTGCCGGAAGAACAGCACAACATATTTATGATAGTGATGGTAAGTTACTTGCTTCTATT
    GGTTATGAAAATAAATATCATGATAGAAAAATAGGACATATTGTTGTTACGTTGTATAAC
    CAAAAAGGAGACCCCAAAAAGATATACGACTATCAGAATAAACCGATAATGTATAACTTG
    GACAGAATCGTTGTTTATATGCGGCTCAGAAGAGTAGGTAATAAATTTTCTATTAAAACT
    TGGAAATTTGATCACATTAAAGACCCAGATAGACGTAAACCTATTGATATGGATGAGAAA
    GAGTGGATAGATGGCGGTAAGTTTTATCAGCGTCCAGCTTCTATCATAGCTATCTATAGT
    GCGAAGTATAATGGTTATAAGTGGATGGAGATGAATGGATTAGGTTCATTCAATACGGAG
    ATTCTACCAAAACCGAAAGGCGCAAGGGATGTCATTATACAAAAAGGTGATTTAGTAAAA
    ATAGATATGCAAGCAAAAAGTGTTGTCATCAATGAGGAACCAATGTTGAGCGAGAAATCG
    TTTGGAAGTAATTATTTCAATGTTGATTCTGGGTACAGTGAATTAATCATACAACCTGAA
    AACGTCTTTGATACGACGGTTAAATGGCAAGATAGATATTTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1485

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1929 [new locus tag: SAUSA300_RS10585 ]
  • symbol: SAUSA300_1929
  • description: phi77 ORF004-like protein phage tail component
  • length: 494
  • theoretical pI: 9.04655
  • theoretical MW: 56998.5
  • GRAVY: -0.547166

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Bacteriophage
  • PFAM:
    no clan defined Sipho_tail; Phage tail protein (PF05709; HMM-score: 158.1)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.00513
    • TAT(Tat/SPI): 0.00019
    • LIPO(Sec/SPII): 0.001054
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYKGRRLESYSFDIPLVVRNDYLSHNGFKTHDDVLNELVKFFNYEEQVKLQFKSKDWYWNAYFEGPIKLHKEFAIPVKFTIKVVLTDPYKYSVTGYKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDEDYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGEGYKATNFSDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLASIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSIKTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFNTEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQPENVFDTTVKWQDRYL

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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