PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005046000
• symbol^?: —
• synonym:
• description^?: phage tail protein

  descriptions from strain specific annotations:

  • phage tail protein
  • bacteriophage tail protein
  • phage tail fiber protein
  • phi77 ORF004-like protein phage tail component
  • phi PVL orfs 18-19-like protein
  • phage protein
  • phage tail family protein
  • phi77 protein
  • Phi PVL hypothetical protein
• strand^?: -
• coordinates^?: 5209420..5210739
• synteny block^?: BlockID0039240
• occurrence^?: in 73% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1765
NCTC8325:
SAOUHSC_02181
Newman:
NWMN_1887
USA300_FPR3757:
SAUSA300_1929
04-02981:
SA2981_1915
08BA02176:
—
11819-97:
MS7_1986
6850:
RSAU_000609
71193:
ST398NM01_2918
ECT-R 2:
ECTR2_1826
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18690
JH1:
SaurJH1_2045
JH9:
SaurJH9_2009
JKD6008:
SAA6008_02007
JKD6159:
SAA6159_01883
LGA251:
—
M013:
—
MRSA252:
SAR2049
MSHR1132:
SAMSHR1132_17940
MSSA476:
SAS1877
Mu3:
SAHV_1940
Mu50:
SAV1954
MW2:
MW1894
RF122:
—
ST398:
—
T0131:
SAT0131_02086
TCH60:
HMPREF0772_11187
TW20:
SATW20_19460
USA300_TCH1516:
USA300HOU_1958
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYKGRRLESYSFDIPLVVR
  NCTC8325        MQDTIQIDNKTIGWLVVQRGFEIPSFNFVTEKENVKGRAGSIVKNRYLNDIEFDLPLIIR
  Newman          MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYKGRRLESYSFDIPLVVR
  USA300_FPR3757  MIDTIKVNNKTIPWLYVERGFEIPSFNYVLKTENVDGRSGSIYKGRRLESYSFDIPLVVR
                  * ***:::**** ** *:*********:* :.***.**:*** *.* *:. .**:**::*
  
  N315            NDYLSHNGIKTHDDVLNELVKFFNYEEQV--KLQFKSKDWYWNAYFEGPIKLHKEFAIPV
  NCTC8325        NEKLSPGGEKTHDDILEALVKFFNIKDLTPKKLKFKSQNWYWFAYFDGPLKLPKNPRGSV
  Newman          NDYLSHNGIKTHDDVLNELVKFFNYEEQV--KLQFKSKDWYWNAYFEGPIKLHKEFTIPV
  USA300_FPR3757  NDYLSHNGFKTHDDVLNELVKFFNYEEQV--KLQFKSKDWYWNAYFEGPIKLHKEFAIPV
                  *: ** .* *****:*: ****** :: .  **:***::*** ***:**:** *:   .*
  
  N315            KFTIKVVLTDPYKYSVTGNKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDE
  NCTC8325        KFTIKVVLTDPYKYSVTGNKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDE
  Newman          KFTIKVVLTDPYKYSVTGNKNTAISDQVSVVNSGTADTPLIVEARAIKSSSYFMITKNDE
  USA300_FPR3757  KFTIKVVLTDPYKYSVTGYKNTAISDQVSVVNSGTADTPLIVEARAIKPSSYFMITKNDE
                  ****************** *****************************.***********
  
  N315            DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
  NCTC8325        DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
  Newman          DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
  USA300_FPR3757  DYFMVGDDEVTKEVKDYMPPVYHSEFRDFKGWTKMITEDIPSNDLGGKVGGDFVISNLGE
                  ************************************************************
  
  N315            GYKATNFPDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
  NCTC8325        GYKATNFPDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
  Newman          GYKATNFPDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
  USA300_FPR3757  GYKATNFSDAKGWVGAGTKRGLPKAMTDFQITYKCIVEQKGKGAGRTAQHIYDSDGKLLA
                  *******.****************************************************
  
  N315            SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
  NCTC8325        SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
  Newman          SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
  USA300_FPR3757  SIGYENKYHDRKIGHIVVTLYNQKGDPKKIYDYQNKPIMYNLDRIVVYMRLRRVGNKFSI
                  ************************************************************
  
  N315            KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
  NCTC8325        KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
  Newman          KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
  USA300_FPR3757  KTWKFDHIKDPDRRKPIDMDEKEWIDGGKFYQRPASIIAIYSAKYNGYKWMEMNGLGSFN
                  ************************************************************
  
  N315            TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
  NCTC8325        TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
  Newman          TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
  USA300_FPR3757  TEILPKPKGARDVIIQKGDLVKIDMQAKSVVINEEPMLSEKSFGSNYFNVDSGYSELIIQ
                  ************************************************************
  
  N315            PENVFDTTVKWQDRYL
  NCTC8325        PENVFDTTVKWQDRYL
  Newman          PENVFDTTVKWQDRYL
  USA300_FPR3757  PENVFDTTVKWQDRYL
                  ****************