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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_2133 [new locus tag: SAUSA300_RS11745 ]
- pan locus tag?: SAUPAN005564000
- symbol: SAUSA300_2133
- pan gene symbol?: —
- synonym:
- product: transporter gate domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_2133 [new locus tag: SAUSA300_RS11745 ]
- symbol: SAUSA300_2133
- product: transporter gate domain-containing protein
- replicon: chromosome
- strand: -
- coordinates: 2306116..2307432
- length: 1317
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3913977 NCBI
- RefSeq: YP_494770 NCBI
- BioCyc: see SAUSA300_RS11745
- MicrobesOnline: 1293648 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1261ATGTCTTTAATTGGTATCTTATTATTTTTAGTACCAATTCCAGTCGAACAAGATGGACAG
AAGCAAACAACGTTGCCCGTGGCATTTTTAGCAGGCGTGCTTAAAGATGTATTAGGTGGC
GTAATGCCATTTTTAATTGTGACGATAATTACTTTATCGGGTATCATAACTCTGATTTGT
TCAACTATTTTAAAAGATAAATTGAAACCTGACGGGCTAATGAACAATGCTTTTAACGTT
AGAATTGGTTGGTTAATTTTACGAATATTAGCAGTTGTTTTTGCATGGATGACATTTTTA
CGAATTGGTTCAAAGGTTATTTACTCAGATGAAACGGGTGGATTATTGTTCTCAAGTTTA
TTGCCAACATTAGTGGCAGTATTCTTATTTGCAGCTCTATTTTTACCGCTATTAATGGAA
TACGGTTTGTTAGAGATGTTGGGTCCTATTTTTAGACCGGTTATGAGACCTTTATTTACA
TTGCCAGGACGTTCGACGGTAGATAATTTAGCATCATTTATTGGAGACGGAACTGTTGGT
GTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTT
ATTTCAACGACATTTAGTGTAGTTTCTATCACCTTTGCAATTGTAGTTGCTGAAACAGTG
CACATGCAAAATCAATTTTTTGCTTTCTATTTATCAGTGATAGTATCCTGCCTCGTTGCA
GCAGTCATTATGCCAAGAATTTGGCCTTTAAATAAAATTCCTGATGAGTATGCTAAGGAG
GTACCTGAAAGTGCGCGTACTGAGGCATTGCCAGAAGGAAAGACGGCATTGAGACATGGC
TTTGATACTGCAACAGAAGTAGGTATTAAAGCACCGGGCGTTATTGACTTTTTTAAGTCA
GGATTAAAAACAGTCATTGATATGTGGTTTGTTATTTTGCCTGTAGTAATGAGTATTGGT
ACTATTGCTACCATTATTGCGAACTACACGCCCTTTTTTGTCATATTGGGTAAACCTTTT
GTTCCATTTTTAGAGTTAATGCAAATACCTGAAGCGGCACAGGCTTCTCAAACGATTATT
ATCGGTTTTGCCGATATGTTTTTACCTTCTATATTAATTGAAGGTGTACAAAATGATATA
ACTCGTTTTGTTATTGGGGCACTTAGTATATCGCAGTTAATATACTTGTCTGAAGTAGGT
GGCGTCATACTTGGTTCGAAGATTCCTGTAAGCATCGGCAAATTGTTTATGATTTTCTTG
ATTAGAACAATCATTACACTACCAATTATTTCTTTGATGGCACATCTTTTGTTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_2133 [new locus tag: SAUSA300_RS11745 ]
- symbol: SAUSA300_2133
- description: transporter gate domain-containing protein
- length: 438
- theoretical pI: 6.79531
- theoretical MW: 47883.1
- GRAVY: 0.890183
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Sporulation and germination sporulation integral membrane protein YlbJ (TIGR02871; HMM-score: 14.9)
- TheSEED :
- Uncharacterized protein SAV2174
- PFAM: no clan defined Gate; Nucleoside recognition (PF07670; HMM-score: 31.7)and 1 moreT_cell_tran_alt; T-cell leukemia translocation-altered (PF15128; HMM-score: 16.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 9
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.034157
- TAT(Tat/SPI): 0.000275
- LIPO(Sec/SPII): 0.018432
- predicted transmembrane helices (TMHMM): 9
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSLIGILLFLVPIPVEQDGQKQTTLPVAFLAGVLKDVLGGVMPFLIVTIITLSGIITLICSTILKDKLKPDGLMNNAFNVRIGWLILRILAVVFAWMTFLRIGSKVIYSDETGGLLFSSLLPTLVAVFLFAALFLPLLMEYGLLEMLGPIFRPVMRPLFTLPGRSTVDNLASFIGDGTVGVLITSRQYGEGYYSRREATVISTTFSVVSITFAIVVAETVHMQNQFFAFYLSVIVSCLVAAVIMPRIWPLNKIPDEYAKEVPESARTEALPEGKTALRHGFDTATEVGIKAPGVIDFFKSGLKTVIDMWFVILPVVMSIGTIATIIANYTPFFVILGKPFVPFLELMQIPEAAQASQTIIIGFADMFLPSILIEGVQNDITRFVIGALSISQLIYLSEVGGVILGSKIPVSIGKLFMIFLIRTIITLPIISLMAHLLL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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