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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL2164 [new locus tag: SACOL_RS11375 ]
- pan locus tag?: SAUPAN005564000
- symbol: SACOL2164
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL2164 [new locus tag: SACOL_RS11375 ]
- symbol: SACOL2164
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 2242249..2243619
- length: 1371
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3237426 NCBI
- RefSeq: YP_186976 NCBI
- BioCyc: see SACOL_RS11375
- MicrobesOnline: 913649 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321ATGGATAGCTTTTCAAGGAAAGAGATAGTTATTGGGAGACTTAAGTTTATTACGATGTCT
TTAATTGGTATCTTATTATTTTTAGTACCAATTCCAGTCGAACAAGATGGACAGAAGCAA
ACAACGTTGCCCGTGGCATTTTTAGCAGGCGTGCTTAAAGATGTATTAGGTGGCGTAATG
CCATTTTTAATTGTGACGATAATTACTTTATCGGGTATCATAACTCTGATTTGTTCAACT
ATTTTAAAAGATAAATTGAAACCTGACGGGCTAATGAACAATGCTTTTAACGTTAGAATT
GGTTGGTTAATTTTACGAATATTAGCAGTTGTTTTTGCATGGATGACATTTTTACGAATT
GGTTCAAAGGTTATTTACTCAGATGAAACGGGTGGATTATTGTTCTCAAGTTTATTGCCA
ACATTAGTGGCAGTATTCTTATTTGCAGCTCTATTTTTACCGCTATTAATGGAATACGGT
TTGTTAGAGATGTTGGGTCCTATTTTTAGACCGGTTATGAGACCTTTATTTACATTGCCA
GGACGTTCGACGGTAGATAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTA
ATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTTATTTCA
ACGACATTTAGTGTAGTTTCTATCACCTTTGCAATTGTAGTTGCTGAAACAGTGCACATG
CAAAATCAATTTTTTGCTTTCTATTTATCAGTGATAGTATCCTGCCTCGTTGCAGCAGTC
ATTATGCCAAGAATTTGGCCTTTAAATAAAATTCCTGATGAGTATGCTAAGGAGGTACCT
GAAAGTGCGCGTACTGAGGCATTGCCAGAAGGAAAGACGGCATTGAGACATGGCTTTGAT
ACTGCAACAGAAGTAGGTATTAAAGCACCGGGCGTTATTGACTTTTTTAAGTCAGGATTA
AAAACAGTCATTGATATGTGGTTTGTTATTTTGCCTGTAGTAATGAGTATTGGTACTATT
GCTACCATTATTGCGAACTACACGCCCTTTTTTGTCATATTGGGTAAACCTTTTGTTCCA
TTTTTAGAGTTAATGCAAATACCTGAAGCGGCACAGGCTTCTCAAACGATTATTATCGGT
TTTGCCGATATGTTTTTACCTTCTATATTAATTGAAGGTGTACAAAATGATATAACTCGT
TTTGTTATTGGGGCACTTAGTATATCGCAGTTAATATACTTGTCTGAAGTAGGTGGCGTC
ATACTTGGTTCGAAGATTCCTGTAAGCATCGGCAAATTGTTTATGATTTTCTTGATTAGA
ACAATCATTACACTACCAATTATTTCTTTGATGGCACATCTTTTGTTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL2164 [new locus tag: SACOL_RS11375 ]
- symbol: SACOL2164
- description: hypothetical protein
- length: 456
- theoretical pI: 8.17607
- theoretical MW: 50005.7
- GRAVY: 0.860526
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Sporulation and germination sporulation integral membrane protein YlbJ (TIGR02871; HMM-score: 13.4)
- TheSEED :
- Predicted arginine uptake transporter
- PFAM: no clan defined Gate; Nucleoside recognition (PF07670; HMM-score: 31.9)and 1 moreT_cell_tran_alt; T-cell leukemia translocation-altered (PF15128; HMM-score: 16.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.131784
- TAT(Tat/SPI): 0.007713
- LIPO(Sec/SPII): 0.01097
- predicted transmembrane helices (TMHMM): 10
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MDSFSRKEIVIGRLKFITMSLIGILLFLVPIPVEQDGQKQTTLPVAFLAGVLKDVLGGVMPFLIVTIITLSGIITLICSTILKDKLKPDGLMNNAFNVRIGWLILRILAVVFAWMTFLRIGSKVIYSDETGGLLFSSLLPTLVAVFLFAALFLPLLMEYGLLEMLGPIFRPVMRPLFTLPGRSTVDNLASFIGDGTVGVLITSRQYGEGYYSRREATVISTTFSVVSITFAIVVAETVHMQNQFFAFYLSVIVSCLVAAVIMPRIWPLNKIPDEYAKEVPESARTEALPEGKTALRHGFDTATEVGIKAPGVIDFFKSGLKTVIDMWFVILPVVMSIGTIATIIANYTPFFVILGKPFVPFLELMQIPEAAQASQTIIIGFADMFLPSILIEGVQNDITRFVIGALSISQLIYLSEVGGVILGSKIPVSIGKLFMIFLIRTIITLPIISLMAHLLL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
- ↑ Dörte Becher, Kristina Hempel, Susanne Sievers, Daniela Zühlke, Jan Pané-Farré, Andreas Otto, Stephan Fuchs, Dirk Albrecht, Jörg Bernhardt, Susanne Engelmann, Uwe Völker, Jan Maarten van Dijl, Michael Hecker
A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome.
PLoS One: 2009, 4(12);e8176
[PubMed:19997597] [WorldCat.org] [DOI] (I e) - ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
The Staphylococcus aureus proteome.
Int J Med Microbiol: 2014, 304(2);110-20
[PubMed:24439828] [WorldCat.org] [DOI] (I p)