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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS11375 [old locus tag: SACOL2164 ]
  • pan locus tag?: SAUPAN005564000
  • symbol: SACOL_RS11375
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS11375 [old locus tag: SACOL2164 ]
  • symbol: SACOL_RS11375
  • product: membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2242249..2243442
  • length: 1194
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (2242249..2243442) NCBI
  • BioCyc: SACOL_RS11375 BioCyc
  • MicrobesOnline: see SACOL2164

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGCCATTTTTAATTGTGACGATAATTACTTTATCGGGTATCATAACTCTGATTTGTTCA
    ACTATTTTAAAAGATAAATTGAAACCTGACGGGCTAATGAACAATGCTTTTAACGTTAGA
    ATTGGTTGGTTAATTTTACGAATATTAGCAGTTGTTTTTGCATGGATGACATTTTTACGA
    ATTGGTTCAAAGGTTATTTACTCAGATGAAACGGGTGGATTATTGTTCTCAAGTTTATTG
    CCAACATTAGTGGCAGTATTCTTATTTGCAGCTCTATTTTTACCGCTATTAATGGAATAC
    GGTTTGTTAGAGATGTTGGGTCCTATTTTTAGACCGGTTATGAGACCTTTATTTACATTG
    CCAGGACGTTCGACGGTAGATAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTC
    TTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTTATT
    TCAACGACATTTAGTGTAGTTTCTATCACCTTTGCAATTGTAGTTGCTGAAACAGTGCAC
    ATGCAAAATCAATTTTTTGCTTTCTATTTATCAGTGATAGTATCCTGCCTCGTTGCAGCA
    GTCATTATGCCAAGAATTTGGCCTTTAAATAAAATTCCTGATGAGTATGCTAAGGAGGTA
    CCTGAAAGTGCGCGTACTGAGGCATTGCCAGAAGGAAAGACGGCATTGAGACATGGCTTT
    GATACTGCAACAGAAGTAGGTATTAAAGCACCGGGCGTTATTGACTTTTTTAAGTCAGGA
    TTAAAAACAGTCATTGATATGTGGTTTGTTATTTTGCCTGTAGTAATGAGTATTGGTACT
    ATTGCTACCATTATTGCGAACTACACGCCCTTTTTTGTCATATTGGGTAAACCTTTTGTT
    CCATTTTTAGAGTTAATGCAAATACCTGAAGCGGCACAGGCTTCTCAAACGATTATTATC
    GGTTTTGCCGATATGTTTTTACCTTCTATATTAATTGAAGGTGTACAAAATGATATAACT
    CGTTTTGTTATTGGGGCACTTAGTATATCGCAGTTAATATACTTGTCTGAAGTAGGTGGC
    GTCATACTTGGTTCGAAGATTCCTGTAAGCATCGGCAAATTGTTTATGATTTTCTTGATT
    AGAACAATCATTACACTACCAATTATTTCTTTGATGGCACATCTTTTGTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1194

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS11375 [old locus tag: SACOL2164 ]
  • symbol: SACOL_RS11375
  • description: membrane protein
  • length: 397
  • theoretical pI: 7.49777
  • theoretical MW: 43610
  • GRAVY: 0.875315

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Sporulation and germination sporulation integral membrane protein YlbJ (TIGR02871; HMM-score: 13.6)
  • TheSEED: see SACOL2164
  • PFAM:
    no clan defined Gate; Nucleoside recognition (PF07670; HMM-score: 33)
    and 1 more
    T_cell_tran_alt; T-cell leukemia translocation-altered (PF15128; HMM-score: 16.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 9
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01353
    • TAT(Tat/SPI): 0.000183
    • LIPO(Sec/SPII): 0.285905
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPFLIVTIITLSGIITLICSTILKDKLKPDGLMNNAFNVRIGWLILRILAVVFAWMTFLRIGSKVIYSDETGGLLFSSLLPTLVAVFLFAALFLPLLMEYGLLEMLGPIFRPVMRPLFTLPGRSTVDNLASFIGDGTVGVLITSRQYGEGYYSRREATVISTTFSVVSITFAIVVAETVHMQNQFFAFYLSVIVSCLVAAVIMPRIWPLNKIPDEYAKEVPESARTEALPEGKTALRHGFDTATEVGIKAPGVIDFFKSGLKTVIDMWFVILPVVMSIGTIATIIANYTPFFVILGKPFVPFLELMQIPEAAQASQTIIIGFADMFLPSILIEGVQNDITRFVIGALSISQLIYLSEVGGVILGSKIPVSIGKLFMIFLIRTIITLPIISLMAHLLL

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization: see SACOL2164
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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