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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_2327 [new locus tag: SAUSA300_RS12860 ]
- pan locus tag?: SAUPAN005907000
- symbol: SAUSA300_2327
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_2327 [new locus tag: SAUSA300_RS12860 ]
- symbol: SAUSA300_2327
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 2503503..2503925
- length: 423
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3913967 NCBI
- RefSeq: YP_494962 NCBI
- BioCyc: see SAUSA300_RS12860
- MicrobesOnline: 1293842 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGAGTAACTCACAAGCAATTCAAGCAATTGAAAACGTGTTAGCAACGTCAAAAGTTGGT
GTATTATCAACTGCATATAATAATAAACCTAATAGTAGATATATGGTCTTTTATAATGAT
GGTCTTACTTTATATACTAAAACGAATATCCATTCTGCTAAGGTCAAAGAAATTAAAGAT
AATCCAGCAGCATATGTTTTGTTAGGCTATAACGACACAACTAATCGTAGTTTCGTTGAG
ATGGAAGCGACAATCGAAATCGTTACAGAACAAGAAGTGATTGATTGGCTATGGGAAACA
CAAGACAAAAGCTTTTTCAGTTCAAAAGAAGATCCAGAGTTATGTGTTTTAAGAGTAGTT
CCGCAATCCATTAAGCTAATGAATGATAAATCATTAGATACACCTATCAAAATCGATTTA
TAA60
120
180
240
300
360
420
423
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_2327 [new locus tag: SAUSA300_RS12860 ]
- symbol: SAUSA300_2327
- description: hypothetical protein
- length: 140
- theoretical pI: 4.59694
- theoretical MW: 15885.9
- GRAVY: -0.296429
⊟Function[edit | edit source]
- TIGRFAM: Unknown function Enzymes of unknown specificity PPOX class probable F420-dependent enzyme (TIGR03618; HMM-score: 26.7)and 3 moreUnknown function Enzymes of unknown specificity PPOX class probable F420-dependent enzyme, Rv3369 family (TIGR03667; EC 1.-.-.-; HMM-score: 18.3)Biosynthesis of cofactors, prosthetic groups, and carriers Pyridoxine pyridoxamine 5'-phosphate oxidase (TIGR00558; EC 1.4.3.5; HMM-score: 18)Unknown function Enzymes of unknown specificity PPOX class probable FMN-dependent enzyme, alr4036 family (TIGR04026; EC 1.-.-.-; HMM-score: 14.2)
- TheSEED :
- General stress protein 26
- PFAM: FMN-binding (CL0336) Putative_PNPOx; Pyridoxamine 5'-phosphate oxidase (PF01243; HMM-score: 56.7)Pyrid_ox_like; Pyridoxamine 5'-phosphate oxidase like (PF16242; HMM-score: 49)and 1 morePyridox_ox_2; Pyridoxamine 5'-phosphate oxidase (PF12900; HMM-score: 17.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.022377
- TAT(Tat/SPI): 0.002178
- LIPO(Sec/SPII): 0.01634
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MSNSQAIQAIENVLATSKVGVLSTAYNNKPNSRYMVFYNDGLTLYTKTNIHSAKVKEIKDNPAAYVLLGYNDTTNRSFVEMEATIEIVTEQEVIDWLWETQDKSFFSSKEDPELCVLRVVPQSIKLMNDKSLDTPIKIDL
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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