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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS01440 [old locus tag: SAUSA300_0268 ]
- pan locus tag?: SAUPAN001161000
- symbol: SAUSA300_RS01440
- pan gene symbol?: —
- synonym:
- product: MFS transporter
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS01440 [old locus tag: SAUSA300_0268 ]
- symbol: SAUSA300_RS01440
- product: MFS transporter
- replicon: chromosome
- strand: -
- coordinates: 319415..320791
- length: 1377
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (319415..320791) NCBI
- BioCyc: SAUSA300_RS01440 BioCyc
- MicrobesOnline: see SAUSA300_0268
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321GTGAATAACACACAATCTTCACCACGCAGTAATATTATTATTGCGATTATGTTGTCTGCA
TTAACATATTGGTTGTTTGCACAATCATTTATTAATATAGGACCTCTCGTTGGTCAAACG
TATCAAACCTCTCCTGCCGTGTTAAATTTATCTATTAGTTTAACTTCCTTCGCCACAGGT
ATCTTCATGGTGGCTGCAGGTGATATTGCTGATAAAATAGGACAACTGAGAATGACATAC
ATGGGTCTCATAATCAGTATGTTTGCATCTCTTCTATTAATTATATCGGACATCACTGCA
CTGCTCATCATCGGTAGAATTTTACAAGGTCTATCAGCAGCTATCTTGTTACCTTCAACA
GTTGGCGTGTTAAATAATCAATTTAAAGGAGAACATTTAAGACGAGCGATTAGTTATCTA
ATGATTAGTACTGTTGGTGGCATCGGCCTAGCTGGTGTTATCGGCGGTTTAATTGCCTCA
AATTTCGGATGGCAAACGAATTTCATCATTAGTATAGTCATTGCTTTCATTGCCATATTG
CTTCTAAAAGGCACACCTGAAAAAGTAAGTCAACATAGCCACCGTCATCCATTCGATTAC
AAAGGTATGTCGATTTTCGCTGTTATGATTGGTAGCTTTACATTATTGTTAACACAAGGA
TTCGAACAAGGTTGGTTTAGTACATTTTCAATCATTTGTCTGAGCATTTTTATCATCACT
ACGTTGATATTCATCATCATCGAACGTCGACATGAAGTACCTTTTATTGATTTCTCAGTA
TTACGCAACCGTCCGTTCATTGGTGCATTTTTAAATAACTTTGTTTTAAATAGCGGTCTA
GGCGTAACAGTGGTCTTTTTCATATATGCTCAAACACACCTTGGTTTATCAGCTGCGCAA
TCTGGACTTGTTACATTGCCATATGCCATTGTGGCAGTTGCGATGATTCGTTTAGGTGAA
AAAGCAACATTACGTTTCGGTGGCAAATTGATGCTCATCATTGGTCCGTTGTTCCCTGTC
ATCGGCATCACTATTATTAGCATGACTCAATTATTGGCATCACAATATGTCATTGCAGTT
ATCATTGGTTTCGTCATATGTGCGATAGGTAATGGTTTAGTCGCAACACCTGGACTTACG
ATTGCAATTTTCAGTATGCCTAATGAAAAAGTTGGTTTAGCTACAGGATTATATAAAATG
AGTGGTACATTAGGTGGCGCCTTTGGTATAGCACTAAGTACTACAGTTTTCAGTATGTTA
CAACTAAACTATGCACCAAGTGTAGCTGCAACCGTAACATTTATAGTCAGCATTGTATTG
ATGATCCTTGGCTCATTGTCTGCATACATGATCATTCCAAAAACAGTTAAATCTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS01440 [old locus tag: SAUSA300_0268 ]
- symbol: SAUSA300_RS01440
- description: MFS transporter
- length: 458
- theoretical pI: 10.1683
- theoretical MW: 49040.3
- GRAVY: 0.980568
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Toxin production and resistance drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 131.7)Transport and binding proteins Other drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family (TIGR00711; HMM-score: 131.7)and 7 moreTransport and binding proteins Carbohydrates, organic alcohols, and acids D-galactonate transporter (TIGR00893; HMM-score: 56.2)multidrug resistance protein (TIGR00880; HMM-score: 45.4)drug resistance transporter, Bcr/CflA subfamily (TIGR00710; HMM-score: 40.7)Transport and binding proteins Carbohydrates, organic alcohols, and acids MFS transporter, aromatic acid:H+ symporter (AAHS) family (TIGR00895; HMM-score: 31.5)Transport and binding proteins Carbohydrates, organic alcohols, and acids phosphoglycerate transporter family protein (TIGR00881; HMM-score: 28.5)Transport and binding proteins Carbohydrates, organic alcohols, and acids oxalate/formate antiporter family transporter (TIGR00890; HMM-score: 21.5)Transport and binding proteins Carbohydrates, organic alcohols, and acids sugar efflux transporter (TIGR00899; HMM-score: 18)
- TheSEED: see SAUSA300_0268
- PFAM: MFS (CL0015) MFS_1; Major Facilitator Superfamily (PF07690; HMM-score: 138.1)and 1 moreno clan defined UL42; HCMV UL42 (PF17638; HMM-score: 13.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 14
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.123294
- TAT(Tat/SPI): 0.003305
- LIPO(Sec/SPII): 0.01869
- predicted transmembrane helices (TMHMM): 14
⊟Accession numbers[edit | edit source]
- GI: 446989289 NCBI
- RefSeq: WP_001066545 NCBI
- UniProt: see SAUSA300_0268
⊟Protein sequence[edit | edit source]
- MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTSPAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMFASLLLIISDITALLIIGRILQGLSAAILLPSTVGVLNNQFKGEHLRRAISYLMISTVGGIGLAGVIGGLIASNFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLTQGFEQGWFSTFSIICLSIFIITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVLNSGLGVTVVFFIYAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLIIGPLFPVIGITIISMTQLLASQYVIAVIIGFVICAIGNGLVATPGLTIAIFSMPNEKVGLATGLYKMSGTLGGAFGIALSTTVFSMLQLNYAPSVAATVTFIVSIVLMILGSLSAYMIIPKTVKS
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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