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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS01620 [old locus tag: SAUSA300_0304 ]
- pan locus tag?: SAUPAN001222000
- symbol: SAUSA300_RS01620
- pan gene symbol?: —
- synonym:
- product: membrane protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS01620 [old locus tag: SAUSA300_0304 ]
- symbol: SAUSA300_RS01620
- product: membrane protein
- replicon: chromosome
- strand: +
- coordinates: 353822..354220
- length: 399
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (353822..354220) NCBI
- BioCyc: SAUSA300_RS01620 BioCyc
- MicrobesOnline: see SAUSA300_0304
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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361ATGGAAAAATCGATCAAAATAATGACAATAATAGGAATTGTTGTTCAGGGTTTAGCAACG
GTATTTAGTTTACTATTGATGGTTTTAGCAGCATCAGGTGTAATGACTACAGATGTGTCA
ACAACAGTTAATGGTGAGGTTGACCCAGTTGATGCAGAAACAGCAGCAGCAATTTTCACT
GTATTATTCTTATCCCTATTCATATTTGGAATCATTTCAATTATTTTAGGTGCAATCGGT
ATGTTTAAAGCATCTAAAAACAAAAAAATGAGTGGTATATTGTTGATTATTGGAGCTGTA
ATAAGTGGTAACATAATTACATTTGCTTTATGGTTAATCAGTGGTATTAAACTACTTACT
AATAACAAGCCTAAAGATGAAATAAGCGACTTATCATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS01620 [old locus tag: SAUSA300_0304 ]
- symbol: SAUSA300_RS01620
- description: membrane protein
- length: 132
- theoretical pI: 6.77736
- theoretical MW: 13902.7
- GRAVY: 1.05758
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_0304
- PFAM: Tetraspannin (CL0347) DUF4064; Protein of unknown function (DUF4064) (PF13273; HMM-score: 63.1)and 7 moreYip1 (CL0112) DUF1129; Protein of unknown function (DUF1129) (PF06570; HMM-score: 21.6)NfeD-like (CL0252) NfeD; NfeD-like C-terminal, partner-binding (PF01957; HMM-score: 18.3)Tetraspannin (CL0347) Tetraspannin; Tetraspanin family (PF00335; HMM-score: 14.6)Yip1 (CL0112) DUF1282; Protein of unknown function (DUF1282) (PF06930; HMM-score: 11)no clan defined DUF2976; Protein of unknown function (DUF2976) (PF11190; HMM-score: 10.5)Myelin_PLP; Myelin proteolipid protein (PLP or lipophilin) (PF01275; HMM-score: 9)CopD_like (CL0430) DUF4149; Domain of unknown function (DUF4149) (PF13664; HMM-score: 7.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 3
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.136735
- TAT(Tat/SPI): 0.011761
- LIPO(Sec/SPII): 0.127787
- predicted transmembrane helices (TMHMM): 3
⊟Accession numbers[edit | edit source]
- GI: 446337820 NCBI
- RefSeq: WP_000415675 NCBI
- UniProt: see SAUSA300_0304
⊟Protein sequence[edit | edit source]
- MEKSIKIMTIIGIVVQGLATVFSLLLMVLAASGVMTTDVSTTVNGEVDPVDAETAAAIFTVLFLSLFIFGIISIILGAIGMFKASKNKKMSGILLIIGAVISGNIITFALWLISGIKLLTNNKPKDEISDLS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization: data available for COL
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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