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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS05020 [old locus tag: SAUSA300_0934 ]
- pan locus tag?: SAUPAN003223000
- symbol: SAUSA300_RS05020
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS05020 [old locus tag: SAUSA300_0934 ]
- symbol: SAUSA300_RS05020
- product: hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 1023467..1025431
- length: 1965
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1023467..1025431) NCBI
- BioCyc: SAUSA300_RS05020 BioCyc
- MicrobesOnline: see SAUSA300_0934
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1921ATGAAATGGTTCAAATTAATACTTGATGTTACAATCTTCATTCTGATTGCTATATTGTTA
TTTGTTTATACATATAAAGAAAACGAAGAAATATTGCCTGATACTAAATACCCTATAGCG
GTAACTGACTGGAATAAAAAATATAGTAAAAATGAGATTTATAAACGTATAGATCAATTC
GCTAAAAATGAGAACGTAGCAATCTATAAATCAACTTCAAATTATACAAACAAAAACGTA
GATAAAGATATATATGTATTTAATAAATCAAAAGCAGCAACTATCACTCCTTTTAATGCT
AAATATAACATTCATTATTTAAGTGACGACGAAGTATTAAAAAAAGATATCAAAGGGAGT
TATTTTGTAAAAGACAAAAATTTTGACGTGTCTAAATTCATAAATTTTTTAAAAGAATAT
GGTGTTACTGCTGAATCATACAAAATAGATCATATGATGATTGCCGTTGGTGTCATTAAA
CAAATGAATATAGTAGTTCCATTATCCTCACTTTTAATCGTTTATTTTATTTATTATATT
TTCGAAAAGAACATTAATTTCAAAGCGTATGCGATTAAGTATTTAAATGGTTTTACATTA
AGAAAAATAATTTTCGAAAATTTTTCAAAGAAATGCACGTATTGGGTAACGTTAATCATA
ACTCAAATTCTTTTAACTACAAGTGTACTTTGGATATTAAATTACACGGGTAATTTAGAT
TTATTCATATTAAGAATAGTTCTGCTTTCATGTCTTTTCATTTTAACGATTAGTGTTATT
AATTTATGGACTTTCTTAATGTTACTAAATTTAAATATTGCAAATATGATTAAAGGTAAG
CAGCACTTTAAAACAATTCGTTTTATTAATACAGTTTGTAAAAGTATTCTCTTAGTACTA
ATAGCTAATGTAATGATAGAAAATACTAGTGTTATTAAAGATTTGAATAAAATAAAAGAA
ACTGAGAAATATTGGAATGTATTAGATGATTATTACACGATTGAATTTGCACCTTATCAC
GAAACAAAACAAAGTTTGATTGATAATATGGTGCGATCAGAACAATTAGTAAAGGCTAGT
GAAGCAGAAAATAATGCGATTTTATTCAAACCAAAGGGTGACTCCGTTGACAATGACAAC
TTTTCGCCTGATGAGGGGAATGTAATATTAGTAAATAATCAGTTCTGGTCGATTTATTAC
AAGCAGTTTCAACCTGATATTCCGATAAAAAATCAAAAAAATAATGTCGAAGTAATTATT
CCACAAAAGTTTCATGCAATGCGTAATGAAATCAATCAAGCATATCATTCATGGTTTGAA
TTTGTACAAAATAAAAATAATAAAGAGAATAAGTTATCTATACAGTTTATCAACAAAAAT
GATTGTCGAATTTTTTCATTTGATGCACGAGATAGTCGCCATTTGTCATTTATAGAGGCG
CCAATCATTGTGAATGTTCAGGCATCAGATTTATCGAATGATTTTTATTATGCCATGATC
AGTCAAGGCGGGTATTTATTCAAAAATTATGACGCGCTAGTAAAAAATATTGAAAAGTAT
CATCTTGATGGGGAAATCAGTGGAATAACCAATTATAAAGATAGCGTGATGGAAATGTAT
CATGAAAACAATTTGAAATTAACAGTACTCAACTTTTCACAAATCATTATCGCAATCATT
TTAATAATTATTATTTTATTTGATGTGAAATATTATTTTGAACAGCATCGAAAATTACTC
GTAATCAAAAAGCTATATGGTTATTCAACATTAAGAGCCAATTACCAATACTTATTAATA
AATAATATAGTTGTTATTTTTATTGGAATATTGACGAATGTAATTTTACATTCTCACTAT
ATAATGATGTTATTTGCAACGATTCTTGTCGTTCAAATATTATTGCAGATTTGCAGCCTA
TACTATCATGGCCGACGTTTTAATGAAGTTATCAAGGAGTTTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS05020 [old locus tag: SAUSA300_0934 ]
- symbol: SAUSA300_RS05020
- description: hypothetical protein
- length: 654
- theoretical pI: 9.18491
- theoretical MW: 77014.4
- GRAVY: 0.0704893
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Toxin production and resistance bacteriocin-associated integral membrane protein (TIGR01654; HMM-score: 751.8)
- TheSEED: see SAUSA300_0934
- PFAM: BPD_transp_1 (CL0404) DUF1430; Protein of unknown function (DUF1430) (PF07242; HMM-score: 47.6)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 6
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.143096
- TAT(Tat/SPI): 0.000568
- LIPO(Sec/SPII): 0.023236
- predicted transmembrane helices (TMHMM): 7
⊟Accession numbers[edit | edit source]
- GI: 446793550 NCBI
- RefSeq: WP_000870806 NCBI
- UniProt: see SAUSA300_0934
⊟Protein sequence[edit | edit source]
- MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQFAKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGSYFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYIFEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLDLFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVLIANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKASEAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVIIPQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEAPIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMYHENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLINNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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