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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS06815 [old locus tag: SAUSA300_1254 ]
- pan locus tag?: SAUPAN003748000
- symbol: SAUSA300_RS06815
- pan gene symbol?: cozEb
- synonym:
- product: AI-2E family transporter
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS06815 [old locus tag: SAUSA300_1254 ]
- symbol: SAUSA300_RS06815
- product: AI-2E family transporter
- replicon: chromosome
- strand: +
- coordinates: 1379765..1380973
- length: 1209
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1379765..1380973) NCBI
- BioCyc: SAUSA300_RS06815 BioCyc
- MicrobesOnline: see SAUSA300_1254
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201TTGAATGAAAATGAAAAGAATATAAGAAAGAATTTTTTAAAATTTACCGAATCACGGTAT
ATGAAGTTTGTTGGTGGGAATGATTTAGTCTTCTCATTAATAGCGCTAGTATTGTTGGGT
ATTGTTATTTTTATTTTCGAAAAAGTATCATATGTTTTTGATCCTTTTATCATCGTTTTT
AAGACGATAGCAGCACCTATCATCGTCTCTTTAATTCTATTCTATCTATTTAACCCAATC
GTAAATATGATGGAACGTTATAGAATACCAAGAGTTGCAGGTATTTCTATTATTTATCTA
GCTGTAGTAGGTGTTATTACGTTAATTGTTAATTTATTGATACCTATTATTGGTTCGCAA
GTAGATAGTTTAGTTAAAAATTCACCGCAATATCTAGAAAAATTAATTAATTCTATTGAT
AAAATAGCAAATAATACGTTTTTCTCTTCGTATTATAGTCAAATTAATGATTGGTTAAAT
TCTTTACCTAAGAAAATACCATCTATGTTAAGTGAATTTACAGATGGCTTTGGGTCTAAA
ATTGCAACGTTTGCAGAAACGATTGCTAATATTGGCGTTGTGATTGTCACAACACCATTT
GTACTATTCTTTATGCTTAAAGATGGACATCACTTCAAAGAATTTTCAACGAATATTATG
CCACCGAAATTCCGAAAAGATTTTCATGATCTACTTGAAAAAATGAGTGTTCAAGTTGGT
TCATACATTCAAGGACAAATTATCGTTTCATTCTGTATCGGTATACTGTTGTTTATCGGT
TATTCGGTTATCGGGTTGAAATATAGCTTAGTATTAGCTAGTATTGCGGCAGTTACAAGT
GTTGTACCATATTTAGGGCCTACTATAGCGATTTCTCCAGCTATTGTAATAGCTGCTATA
ACATCGCCGTGGATGCTCTTAAAATTAGCAGTAGTATGGACTTTAGTACAATTTGTTGAA
GGGCACTTCATTTCACCAAATATCATGGGTAAAACACTTAAGATTCATCCACTTACAATC
ATTTTCATTTTACTGTGTGCAGGCAAATTGCTTGGTATTGTAGGCGTTATTTTAGGTATT
CCGGGATATGCTATTTTAAAAGTATTAGTTACTCATTTATTCCAATTATTTAAACGTCGA
TACAATCGTTTCTATGGTAATGATGTAGGTGAATATGATATTAAAGAAAGTAATAAAATA
GTTGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS06815 [old locus tag: SAUSA300_1254 ]
- symbol: SAUSA300_RS06815
- description: AI-2E family transporter
- length: 402
- theoretical pI: 9.75714
- theoretical MW: 45073.6
- GRAVY: 0.708458
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Sporulation and germination sporulation integral membrane protein YtvI (TIGR02872; HMM-score: 117.7)
- TheSEED: see SAUSA300_1254
- PFAM: no clan defined AI-2E_transport; AI-2E family transporter (PF01594; HMM-score: 261.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 8
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.001176
- TAT(Tat/SPI): 0.000116
- LIPO(Sec/SPII): 0.000708
- predicted transmembrane helices (TMHMM): 8
⊟Accession numbers[edit | edit source]
- GI: 446927496 NCBI
- RefSeq: WP_001004752 NCBI
- UniProt: see SAUSA300_1254
⊟Protein sequence[edit | edit source]
- MNENEKNIRKNFLKFTESRYMKFVGGNDLVFSLIALVLLGIVIFIFEKVSYVFDPFIIVFKTIAAPIIVSLILFYLFNPIVNMMERYRIPRVAGISIIYLAVVGVITLIVNLLIPIIGSQVDSLVKNSPQYLEKLINSIDKIANNTFFSSYYSQINDWLNSLPKKIPSMLSEFTDGFGSKIATFAETIANIGVVIVTTPFVLFFMLKDGHHFKEFSTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYSLVLASIAAVTSVVPYLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHPLTIIFILLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRRYNRFYGNDVGEYDIKESNKIVE
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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