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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS07495 [old locus tag: SAUSA300_1372 ]
  • pan locus tag?: SAUPAN003948000
  • symbol: SAUSA300_RS07495
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS07495 [old locus tag: SAUSA300_1372 ]
  • symbol: SAUSA300_RS07495
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1540048..1541001
  • length: 954
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    TTGCAACACATTATAAAAACAGCATTACAACAAACATTTAACTATAAAACAAATAAAAGT
    ATTTACAATATCTTAGTTGGTAAGAAATCTCACCAAACCTTTTTTGACGCTTGTAGTCAA
    CAACAGTTGTCATTATATCACAGTTTACCACTATTAAAATATCCGTCTTTTGAGCTATTT
    TTAGAAAAAATCAATGAATTTAATGCTGAAATGGAAATCATGTTGCATCCTAGATATACA
    TTTGAAAGCATGGGGCAAACATTTCAAGCAATTCAACTATTAGTGCAAACCATGTCTAAT
    ACCAAACAACATGTTTTTCATTTTGTACCAATCTCTCAAAATAATAAGATACAAGAAACT
    GTAAAGATTGTCTATAACTACATTAAAGAAAACCAATTACAAATTGATTTTGAAAATGAA
    CTACATAACTTGTTTAAAGCAATAACTTTAAAAGGGCCATGTTACTTACATTATTATTTG
    CAAGGCTATGATGAACCAATGTATACGAGACAGCAAGTTAGTTTAATAGAAAAGCTATCT
    CAACAGCAATTGTTTGAATACGAAATGAATAATTTAGTGACAATGATGTTTGAATTAGAA
    AGTGGAGAATATACTATTTTATCAAAAATAATAATGAAACCTACATTATTAAATCAAACT
    TATATTACTTATACAAAATTGCTTGAACAATTCACGATGGAAGATATAGCGGCTCAACAA
    CAAGTTAAAATCAATACTATCGAAGATCATGTACTTGAAATCTTAATCAAAGGTTACATG
    TCTAATTACGATGATTATGTTGAACTAGAAGATCAACTCCAGTTTTTGAATTTTTATCAA
    CAGCATCGTGGCGAACGATTAAAATTTTACAAAGAACAATTTGACACGTTATCATATTTT
    CAATTAAAAGTATTAATCGTTGGATTTGAAAGAGGTGATCTGAATGTTGCATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    954

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_RS07495 [old locus tag: SAUSA300_1372 ]
  • symbol: SAUSA300_RS07495
  • description: hypothetical protein
  • length: 317
  • theoretical pI: 5.79327
  • theoretical MW: 37849.2
  • GRAVY: -0.332808

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SAUSA300_1372
  • PFAM:
    HTH (CL0123) HTH_40; Helix-turn-helix domain (PF14493; HMM-score: 52.1)
    and 1 more
    no clan defined PolC_DP2; DNA polymerase II large subunit DP2 (PF03833; HMM-score: 9.1)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.023762
    • TAT(Tat/SPI): 0.000512
    • LIPO(Sec/SPII): 0.005869
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MQHIIKTALQQTFNYKTNKSIYNILVGKKSHQTFFDACSQQQLSLYHSLPLLKYPSFELFLEKINEFNAEMEIMLHPRYTFESMGQTFQAIQLLVQTMSNTKQHVFHFVPISQNNKIQETVKIVYNYIKENQLQIDFENELHNLFKAITLKGPCYLHYYLQGYDEPMYTRQQVSLIEKLSQQQLFEYEMNNLVTMMFELESGEYTILSKIIMKPTLLNQTYITYTKLLEQFTMEDIAAQQQVKINTIEDHVLEILIKGYMSNYDDYVELEDQLQFLNFYQQHRGERLKFYKEQFDTLSYFQLKVLIVGFERGDLNVA

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]