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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_RS07580 [old locus tag: SAUSA300_1389 ]
- pan locus tag?: SAUPAN001816000
- symbol: SAUSA300_RS07580
- pan gene symbol?: —
- synonym:
- product: minor structural protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_RS07580 [old locus tag: SAUSA300_1389 ]
- symbol: SAUSA300_RS07580
- product: minor structural protein
- replicon: chromosome
- strand: -
- coordinates: 1552737..1554647
- length: 1911
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_007793 (1552737..1554647) NCBI
- BioCyc: SAUSA300_RS07580 BioCyc
- MicrobesOnline: see SAUSA300_1389
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1861ATGGAAAATTTGTATTTAATAAAGGATTTGGGAGCTTTAGCAGGTCGAGATTATAGAGCT
AAAGAAATTCAAAACCTGCAAAGAATAGAGCAATTTGCGCTTGGCTTGACAACAGAGTTT
AAGTTGCATCAGAAAGCTAAAACAATGCAACACTTCGCTGAGCAAATTTATTATAATGGT
AGATCGCAAGCAGCAGTAAACAAATCTTTACAAAGTCAAATTAACGCACTTGTTGTGGCA
CCACGTAATAACAGTGCTAATGAGATTGTTCAAGCTCGAGTTAATGTAAACGGCGAAACC
TTTGACACATTAAAAGAACATTTAGACGATTGGGAAACCAAAACTCAAATTAATAAAGAG
GAAACTATAAGAGAATTAAATAAGACCAAACAAGAAATTCTTGATATCGAGTATCGTTTT
GAACCTGATAAGCAAGAGTTTTTATTTGTGACAGAACTTGCACCTCTTACAAATGCAGTA
ATGCAATCCTTCTGGTTTGATAATAGAACAGGCATAGTATACATGACACAAGCTAGAAAT
AATGGCTATATGCTAAGTCGTTTAAGACCTAATGGTCAATTTATAGACAGCTCATTGATT
GTAGGTGGGGGTCATGGTACACATAACGGTTATAGATATATTGATGATGAGTTATGGATT
TATAGTTTTATCTTAAATGGTAATAATGAGAATACATTAGTTCGTTTCAAGTATACGCCT
AATGTGGAAATTAGCTATGGCAAGTATGGTATGCAAGATGTATTTACAGGACACCCAGAA
AAACCCTACATCACCCCTGTCATAAATGAAAAAGAAAATAAAATTCTATACAGAATTGAG
AGACCTAGAAGTCAGTGGGAACTTGAAAACTCAATGAATTATATAGAGATAAGAAGTTTA
GACGATGTTGATAAAAATATTGATAAAGTTTTGCATAAAATCAGTATCCCTATGAGACTA
ACAAACGAAACCCAACCAATGCAGGGTGTGACTTTTGATGAAAAATACTTGTATTGGTAT
ACAGGAGACAGTAATCCAAATAATAGAAACTATTTAACGGCTTTCGATTTAGAAACAGGA
GAAGAAGCGTATCAGGTTAATGCTGACTATGGTGGAACACTAGATTCATTTCCTGGCGAA
TTTGCGGAAGCAGAAGGTTTGCAAATATACTATGACAAAGATAGTGGTAAAAAAGCTTTG
ATGCTAGGTGTTACTGTCGGTGGTGATGGAAATAGAACACATCGTATTTTCATGATTGGG
CAAAGAGGTATTTTAGAAATACTTCACTCAAGAGGCGTTCCTTTTATCATGAGTGACACA
GGTGGTAGAGTTAAACCTTTACCAATGAGGCCTGATAAACTTAAGAATCTTGGGATGTTA
ACAGAGCCAGGTCTTTACTATTTATACACTGATCATACAGTTCAAATCGATGATTTCCCA
TTACCAAGAGAATGGCGTGATGCAGGTTGGTTCTTGGAAGTTAAGCCACCACAAACTGGC
GGTGATGTAATTCAGATATTGACGCGTAATAGTTATGCAAGGAATATGATGACTTTTGAA
AGGGTGCTTTCTGGAAGAACTGGAGACATTTCGGACTGGAATTATGTGCCTAAAAATAGT
GGTAAATGGGAGAGAGTACCTTCATTCATCACAAAAATGTCAGATATTAACATAGTAGGC
ATGTCGTTTTATTTAACTACGGATGATACAAAACGTTTTACAGATTTTCCAACTGAACGT
AAAGGGGTAGCTGGTTGGAACTTATATGTAGAAGCTTCAAACACAGGTGGCTTTGTTCAT
AGGCTAGTTCGTAATAGTGTTACAGCATCTGCTGAGATACTATTGAAAAATTATGATAGT
AAAACAAGTTCAGGGCCATGGACTTTACACGAAGGGAGAATTATAAGTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_RS07580 [old locus tag: SAUSA300_1389 ]
- symbol: SAUSA300_RS07580
- description: minor structural protein
- length: 636
- theoretical pI: 5.9963
- theoretical MW: 73122.9
- GRAVY: -0.57217
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: see SAUSA300_1389
- PFAM: Beta_propeller (CL0186) PQQ; PQQ enzyme repeat (PF01011; HMM-score: 13.4)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005021
- TAT(Tat/SPI): 0.000745
- LIPO(Sec/SPII): 0.000719
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI: 446351703 NCBI
- RefSeq: WP_000429558 NCBI
- UniProt: see SAUSA300_1389
⊟Protein sequence[edit | edit source]
- MENLYLIKDLGALAGRDYRAKEIQNLQRIEQFALGLTTEFKLHQKAKTMQHFAEQIYYNGRSQAAVNKSLQSQINALVVAPRNNSANEIVQARVNVNGETFDTLKEHLDDWETKTQINKEETIRELNKTKQEILDIEYRFEPDKQEFLFVTELAPLTNAVMQSFWFDNRTGIVYMTQARNNGYMLSRLRPNGQFIDSSLIVGGGHGTHNGYRYIDDELWIYSFILNGNNENTLVRFKYTPNVEISYGKYGMQDVFTGHPEKPYITPVINEKENKILYRIERPRSQWELENSMNYIEIRSLDDVDKNIDKVLHKISIPMRLTNETQPMQGVTFDEKYLYWYTGDSNPNNRNYLTAFDLETGEEAYQVNADYGGTLDSFPGEFAEAEGLQIYYDKDSGKKALMLGVTVGGDGNRTHRIFMIGQRGILEILHSRGVPFIMSDTGGRVKPLPMRPDKLKNLGMLTEPGLYYLYTDHTVQIDDFPLPREWRDAGWFLEVKPPQTGGDVIQILTRNSYARNMMTFERVLSGRTGDISDWNYVPKNSGKWERVPSFITKMSDINIVGMSFYLTTDDTKRFTDFPTERKGVAGWNLYVEASNTGGFVHRLVRNSVTASAEILLKNYDSKTSSGPWTLHEGRIIS
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization: data available for COL
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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