From AureoWiki
Jump to navigation Jump to search
Pangenome04-0298108BA0217611819-97685071193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS07705 [old locus tag: SAUSA300_1412 ]
  • pan locus tag?: SAUPAN001578000
  • symbol: SAUSA300_RS07705
  • pan gene symbol?: rinB
  • synonym:
  • product: transcriptional activator RinB

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS07705 [old locus tag: SAUSA300_1412 ]
  • symbol: SAUSA300_RS07705
  • product: transcriptional activator RinB
  • replicon: chromosome
  • strand: -
  • coordinates: 1578090..1578242
  • length: 153
  • essential: unknown

Accession numbers[edit | edit source]

  • Location: NC_007793 (1578090..1578242) NCBI
  • BioCyc:
  • MicrobesOnline:

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    ATGATTAAACAAATACTAAGACTATTATTCTTACTAGCAATGTATGAGTTAGGTAAGTAT
    GTAACTGAGCAAGTGTATATTATGATGACGGCTAATGATGATGTAGAGGCGCCGAGTGAT
    TACGAAAAAATCAGAGCTGAAGTTTCATGGTAA
    60
    120
    153

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_RS07705 [old locus tag: SAUSA300_1412 ]
  • symbol: SAUSA300_RS07705
  • description: transcriptional activator RinB
  • length: 50
  • theoretical pI: 4.28987
  • theoretical MW: 5929.93
  • GRAVY: 0.098

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED:
  • PFAM:
    no clan defined RinB; Transcriptional activator RinB (PF06116; HMM-score: 86.6)

Structure, modifications & interactions[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.32
    • Cytoplasmic Membrane Score: 9.55
    • Cellwall Score: 0.12
    • Extracellular Score: 0.01
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.154053
    • TAT(Tat/SPI): 0.003063
    • LIPO(Sec/SPII): 0.023013
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

  • GI: 446517917 NCBI
  • RefSeq: WP_000595263 NCBI
  • UniProt:

Protein sequence[edit | edit source]

  • MIKQILRLLFLLAMYELGKYVTEQVYIMMTANDDVEAPSDYEKIRAEVSW

Experimental data[edit | edit source]

  • experimentally validated: no data available

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]