From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS09760 [old locus tag: SAUSA300_1783 ]
  • pan locus tag?: SAUPAN004758000
  • symbol: SAUSA300_RS09760
  • pan gene symbol?: hemE
  • synonym:
  • product: uroporphyrinogen decarboxylase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS09760 [old locus tag: SAUSA300_1783 ]
  • symbol: SAUSA300_RS09760
  • product: uroporphyrinogen decarboxylase
  • replicon: chromosome
  • strand: -
  • coordinates: 1965116..1966153
  • length: 1038
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGTGCATAATAAAAACAATACAATTTTAAAAATGATCAAAGGTGAAGAAACATCACAT
    ACACCTGTTTGGTTTATGCGACAAGCTGGCCGTTCGCAACCAGAATATCGAAAATTGAAA
    GAAAAATATTCACTATTCGATATTACACATCAGCCGGAGTTGTGCGCTTATGTAACACAT
    TTACCAGTTGATAATTATCATACAGATGCAGCAATTTTATACAAAGATATTATGACACCA
    TTAAAGCCAATTGGTGTCGATGTAGAAATTAAATCGGGTATTGGTCCAGTGATTCATAAT
    CCAATCAAAACAATTCAAGATGTTGAGAAACTTTCTCAAATAGACCCCGAACGAGATGTA
    CCATATGTATTAGATACAATTAAACTTTTAACAGAAGAAAAGTTAAATGTGCCGCTAATA
    GGATTTACTGGGGCACCATTTACATTAGCGTCATATATGATTGAAGGCGGACCATCGAAA
    AATTACAATTTTACAAAAGCGATGATGTATAGAGATGAAGCAACATGGTTTGCTTTAATG
    AATCATTTAGTTGATGTATCTGTTAAATATGTAACAGCTCAAGTCGAAGCAGGTGCCGAA
    TTGATTCAAATTTTCGATTCATGGGTAGGTGCATTAAATGTCGAGGATTACAGACGTTAC
    ATTAAACCACATATGATTCGATTAATCAGTGAGGTTAAAGAAAAACATGATGTGCCGGTA
    ATTTTATTCGGTGTAGGTGCCAGTCATTTAATCAATGAATGGAATGATTTACCGATTGAT
    GTATTAGGCCTAGATTGGAGAACGTCTATTAATCAGGCTCAACAATTAGGCGTTACTAAA
    ACATTACAAGGGAATTTAGATCCATCAATTTTATTAGCACCATGGAATGTCATTGAAGAG
    AGATTGAAACCAATATTAGATCAAGGTATGGAGAACGGTAAACACATCTTTAATTTAGGA
    CACGGTGTATTCCCAGAAGTGCAACCAGAGACGTTACGTAAAGTAAGCGAATTCGTACAC
    ACATATACACAAAGATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1038

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS09760 [old locus tag: SAUSA300_1783 ]
  • symbol: SAUSA300_RS09760
  • description: uroporphyrinogen decarboxylase
  • length: 345
  • theoretical pI: 6.324
  • theoretical MW: 39352.1
  • GRAVY: -0.231304

⊟Function[edit | edit source]

  • reaction:
    EC 4.1.1.37?  ExPASy
    Uroporphyrinogen decarboxylase Uroporphyrinogen III = coproporphyrinogen + 4 CO2
  • TIGRFAM:
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin uroporphyrinogen decarboxylase (TIGR01464; EC 4.1.1.37; HMM-score: 420.6)
    and 2 more
    methyltransferase, MtaA/CmuA family (TIGR01463; EC 2.1.1.-; HMM-score: 61.8)
    Signal transduction Regulatory functions Protein interactions phosphohistidine phosphatase SixA (TIGR00249; EC 3.1.3.-; HMM-score: 15.4)
  • TheSEED: see SAUSA300_1783
  • PFAM:
    Methionine_synt (CL0160) URO-D; Uroporphyrinogen decarboxylase (URO-D) (PF01208; HMM-score: 403.6)
    and 1 more
    TPR (CL0020) COPI_C; Coatomer (COPI) alpha subunit C-terminus (PF06957; HMM-score: 11.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006385
    • TAT(Tat/SPI): 0.000484
    • LIPO(Sec/SPII): 0.000852
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVHNKNNTILKMIKGEETSHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTHLPVDNYHTDAAILYKDIMTPLKPIGVDVEIKSGIGPVIHNPIKTIQDVEKLSQIDPERDVPYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNFTKAMMYRDEATWFALMNHLVDVSVKYVTAQVEAGAELIQIFDSWVGALNVEDYRRYIKPHMIRLISEVKEKHDVPVILFGVGASHLINEWNDLPIDVLGLDWRTSINQAQQLGVTKTLQGNLDPSILLAPWNVIEERLKPILDQGMENGKHIFNLGHGVFPEVQPETLRKVSEFVHTYTQR

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_RS09760&oldid=63722"