PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus USA300_FPR3757
• locus tag: SAUSA300_RS10565 [old locus tag: SAUSA300_1925 ]
• pan locus tag^?: SAUPAN005042000
• symbol: SAUSA300_RS10565
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Gene

⊟General

• type: CDS
• locus tag: SAUSA300_RS10565 [old locus tag: SAUSA300_1925 ]
• symbol: SAUSA300_RS10565
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 2090666..2090962
• length: 297
• essential: unknown other strains

⊟Accession numbers

• Location: NC_007793 (2090666..2090962) NCBI
• BioCyc: see SAUSA300_1925
• MicrobesOnline: see SAUSA300_1925

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
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  TTGGGGTGGTTCAAAAAACACGAACATGAATGGCGCATCAGAAGGTTAGAAGAGAATGAT
  AAAACAATGCTCAGCACACTCAATGAAATTAAATTAGGTCAAAAAACCCAAGAGCAAGTT
  AACATTAAATTAGATAAAACCTTAGATGCTATTCAAAAAGAAAGAGAAATAGATGAAAAG
  AATAAGAAAGAAAATGATAAGAACATACGTGATATGAAAATGTGGGTGCTTGGTTTAGTT
  GGGACAATATTTGGATCGCTAATTATAGCATTATTGCGTATGCTTATGGGCATATAA
  60
  120
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  297
  

⊟Protein

⊟General

• locus tag: SAUSA300_RS10565 [old locus tag: SAUSA300_1925 ]
• symbol: SAUSA300_RS10565
• description: hypothetical protein
• length: 98
• theoretical pI: 10.0627
• theoretical MW: 11665.7
• GRAVY: -0.627551

⊟Function

• TIGRFAM:
  Cellular processes Cellular processes Sporulation and germination stage III sporulation protein AB (TIGR02833; HMM-score: 16.1)
• TheSEED: see SAUSA300_1925
• PFAM:
  no clan defined DUF2951; Protein of unknown function (DUF2951) (PF11166; HMM-score: 185.3)
  and 5 more
  ClpP_crotonase (CL0127) Peptidase_S49_N; Peptidase family S49 N-terminal (PF08496; HMM-score: 15.2)
  no clan defined BicD; Microtubule-associated protein Bicaudal-D (PF09730; HMM-score: 14.3)
  RAMP4; Ribosome associated membrane protein RAMP4 (PF06624; HMM-score: 12.4)
  DUF1191; Protein of unknown function (DUF1191) (PF06697; HMM-score: 11.7)
  XhlA; Haemolysin XhlA (PF10779; HMM-score: 9.2)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 1.78
  • Cytoplasmic Membrane Score: 8.16
  • Cellwall Score: 0.06
  • Extracellular Score: 0.01
  • Internal Helix: 1
• LocateP:
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.002711
  • TAT(Tat/SPI): 0.000267
  • LIPO(Sec/SPII): 0.00069
• predicted transmembrane helices (TMHMM): 1

⊟Accession numbers

• GI: 446461834 NCBI
• RefSeq: WP_000539688 NCBI
• UniProt: see SAUSA300_1925

⊟Protein sequence

• MGWFKKHEHEWRIRRLEENDKTMLSTLNEIKLGQKTQEQVNIKLDKTLDAIQKEREIDEKNKKENDKNIRDMKMWVLGLVGTIFGSLIIALLRMLMGI

⊟Experimental data

• experimentally validated:
• protein localization:
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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