From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_RS13365 [old locus tag: SAUSA300_2414 ]
  • pan locus tag?: SAUPAN006030000
  • symbol: SAUSA300_RS13365
  • pan gene symbol?: cntK
  • synonym:
  • product: diaminopimelate epimerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_RS13365 [old locus tag: SAUSA300_2414 ]
  • symbol: SAUSA300_RS13365
  • product: diaminopimelate epimerase
  • replicon: chromosome
  • strand: -
  • coordinates: 2599617..2600438
  • length: 822
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAATCGGCAGGTTATAGAATTTTCTAAGTATAATCCTTCGGGGAATATGACGATACTT
    GTTCATTCAAAACATGATGCTAGTGAATATGCATCTATCGCCAATCAGTTGATGGCCGCA
    ACACATGTATGCTGTGAACAGGTAGGCTTTATAGAATCAACACAAAATGATGATGGTAAT
    GATTTTCACTTAGTTATGAGCGGTAATGAATTTTGCGGTAATGCGACGATGTCATATATA
    CATCATTTGCAGGAAAGTCATTTGCTTAAAGACCAACAGTTTAAGGTGAAGGTGTCTGGC
    TGTTCGGATTTAGTGCAATGCGCAATTCATGATTGCCAATACTATGAAGTTCAAATGCCA
    CAAGCCCATCGTGTTGTGCCAACAACAATTAATATGGGTAATCATTCATGGAAAGCAATA
    GAAATTATTTATGAAACATATGTACATTATGTGATTCCAGTTAAACAAGTAACAACAGAA
    ATTCAACATTTGGTTGAAGCGTTTGTGCGTGAGCAACAATGGAGTCACAAATATAAAACA
    GTAGGTATGATGCTTTTTGATGAACAACGTCAATTTTTACAGCCATTAATCTATATACCA
    GAAATTCAAAGTTTAATTTGGGAAAATAGCTGTGGTTCTGGTACAGCATCAATTGGGGTT
    TTTAATAATTATCAACGTAATGACGCATGCAAAGATTTTACAGTACATCAGCCAGGGGGC
    AGTATTTTAGTGACATCAAAGCGATGTCATCAATTGGGATATCAAACTTCAATTAAAGGA
    CAGGTTACAACTGTAGCTACAGGAAAAGCATATATAGAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    822

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_RS13365 [old locus tag: SAUSA300_2414 ]
  • symbol: SAUSA300_RS13365
  • description: diaminopimelate epimerase
  • length: 273
  • theoretical pI: 6.5539
  • theoretical MW: 31003.9
  • GRAVY: -0.301099

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Amino acid biosynthesis Aspartate family diaminopimelate epimerase (TIGR00652; EC 5.1.1.7; HMM-score: 31)
  • TheSEED: see SAUSA300_2414
  • PFAM:
    DAP_epimerase (CL0288) DAP_epimerase; Diaminopimelate epimerase (PF01678; HMM-score: 28.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018326
    • TAT(Tat/SPI): 0.001258
    • LIPO(Sec/SPII): 0.002362
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MNRQVIEFSKYNPSGNMTILVHSKHDASEYASIANQLMAATHVCCEQVGFIESTQNDDGNDFHLVMSGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQYYEVQMPQAHRVVPTTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVEAFVREQQWSHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://aureowiki.med.uni-greifswald.de/index.php?title=SAUSA300_RS13365&oldid=100318"