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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS00365 [old locus tag: SA0044 ]
  • pan locus tag?: SAUPAN000110000
  • symbol: SA_RS00365
  • pan gene symbol?:
  • synonym:
  • product: dihydroneopterin aldolase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS00365 [old locus tag: SA0044 ]
  • symbol: SA_RS00365
  • product: dihydroneopterin aldolase
  • replicon: chromosome
  • strand: -
  • coordinates: 52363..53427
  • length: 1065
  • essential: no DEG

Accession numbers[edit | edit source]

  • Location: NC_002745 (52363..53427) NCBI
  • BioCyc: G1G21-48 BioCyc
  • MicrobesOnline: see SA0044

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGAACAATACAAAGAAGTACACATTAATTCATTAAACAAAGAAGAATTAGAAAAATTG
    GCAAAAATGGGTCAATTGATTGATGTTAGAACAAAAGAAGAATATGAATTAGGACACATT
    AACGGTTCAACTTTACACCCAGTAGAAGAGATTAAATCATTCAATAAGAATAGCAACAAA
    ACGTATTATATACATTGTAAAAGCGGTAACCGAAGCACTAAAGCTTGCGATTATTTAGCC
    AAACAAGGTTATGATGTCGTGAATTTAAAGGGTGGATATAAAGATTATGAAGCAAAGAAC
    TTCAATAGTGCTCCTTTAATAGAAAAAGATATTGAAATCAAAGAGAATCGTAAACAATTT
    GATTTTAGAGGTCTTCAGTGCCCTGGACCTATTGTTAATATCAGTAAAGAAATTAACAAT
    ATTTCAACGGGTGAGCAAATCGAGGTAACAGTTACAGATCCTGGTTTCAATAGTGATATT
    AAAAGTTGGGCGAAACAAACAGGGAATACCCTTGTAAATCTTACTGAAGAAGCAAATGTA
    ATTAATGCAATTATTCAAAAAGAAAAGCCAAAAGAATTTGAAATCAATGACACTGCTACA
    GGTACAACAATTGTTTTATTTAGCGGTGAGTTAGATAAGGCAGTAGCAGCAATGATCATC
    GCAAATGGCGCTAAAGCAGCAGGTAAAGATGTAACTATTTTCTTTACTTTTTGGGGCCTC
    AACGCATTAAAAAAAGCGCAATCAACTCGCGTTAAAAAGAAAGGTATTTCCAAAATGTTT
    GACCTTATGTTACCTAAGGATCCAATACATATGCCATTATCAAAAATGAATATGTTTGGA
    CTAGGTAATATTATGATGCGTTATGTAATGAACAAGAAAAATGTTGATTCTTTATACTCA
    CTTATCGATCAAGCAATCGATCAAGATATAAAGTTAATTGCTTGTACCATGAGTATGGAT
    GTTATGGGAATTTCAAAAGAAGAATTAAGAGATGAAGTCGATTATGGTGGCGTAGGTACT
    TATATTGGACATACTGAGCAAGCAAATCATAACTTATTTATCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
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    660
    720
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    840
    900
    960
    1020
    1065

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS00365 [old locus tag: SA0044 ]
  • symbol: SA_RS00365
  • description: dihydroneopterin aldolase
  • length: 354
  • theoretical pI: 6.88036
  • theoretical MW: 39758.3
  • GRAVY: -0.418079

Function[edit | edit source]

  • TIGRFAM:
    phage shock operon rhodanese PspE (TIGR02981; EC 2.8.1.1; HMM-score: 32.8)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA 2-selenouridine synthase (TIGR03167; EC 2.9.1.-; HMM-score: 30.4)
    selenium metabolism protein YedF (TIGR03527; HMM-score: 28.8)
    and 1 more
    thiazole biosynthesis domain (TIGR04271; HMM-score: 15.9)
  • TheSEED: see SA0044
  • PFAM:
    DsrEFH-like (CL0394) DrsE_2; DsrE/DsrF/DrsH-like family (PF13686; HMM-score: 187.4)
    and 6 more
    TusA-like (CL0397) TusA; Sulfurtransferase TusA (PF01206; HMM-score: 65.2)
    Phosphatase (CL0031) Rhodanese; Rhodanese-like domain (PF00581; HMM-score: 48.4)
    DsrEFH-like (CL0394) DrsE; DsrE/DsrF-like family (PF02635; HMM-score: 39.9)
    no clan defined UPF0180; Uncharacterised protein family (UPF0180) (PF03698; HMM-score: 14.6)
    6_Hairpin (CL0059) Prenyltrans; Prenyltransferase and squalene oxidase repeat (PF00432; HMM-score: 12.8)
    OB (CL0021) RNA_pol_RpbG; DNA-directed RNA polymerase, subunit G (PF16992; HMM-score: 8.5)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.020736
    • TAT(Tat/SPI): 0.001823
    • LIPO(Sec/SPII): 0.00172
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MEQYKEVHINSLNKEELEKLAKMGQLIDVRTKEEYELGHINGSTLHPVEEIKSFNKNSNKTYYIHCKSGNRSTKACDYLAKQGYDVVNLKGGYKDYEAKNFNSAPLIEKDIEIKENRKQFDFRGLQCPGPIVNISKEINNISTGEQIEVTVTDPGFNSDIKSWAKQTGNTLVNLTEEANVINAIIQKEKPKEFEINDTATGTTIVLFSGELDKAVAAMIIANGAKAAGKDVTIFFTFWGLNALKKAQSTRVKKKGISKMFDLMLPKDPIHMPLSKMNMFGLGNIMMRYVMNKKNVDSLYSLIDQAIDQDIKLIACTMSMDVMGISKEELRDEVDYGGVGTYIGHTEQANHNLFI

Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]