PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus N315
• locus tag: SA_RS00865 [old locus tag: SA0139 ]
• pan locus tag^?: SAUPAN000958000
• symbol: SA_RS00865
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: SA_RS00865 [old locus tag: SA0139 ]
• symbol: SA_RS00865
• product: hypothetical protein
• replicon: chromosome
• strand: +
• coordinates: 158837..160381
• length: 1545
• essential: no DEG other strains

⊟Accession numbers

• Location: NC_002745 (158837..160381) NCBI
• BioCyc: SA_RS00865 BioCyc
• MicrobesOnline: see SA0139

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

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  ATGAAAAAAATATATAAGTCATTAACTGTCTCTGCAATTGTTGCAACGGTATCATTAAGT
  GCTTTACCGCAATCTTTAGCTATAACGCATGAATCGCAACCTACAAAGCAACAGCGAACG
  GTATTATTCGATCGTTCTCATGGTCAAACAGCTGGTGCTGCAGATTGGGTTAGTGATGGT
  GCATTTTCAGATTATGCGGATTCAATACAAAAACAAGGTTATGACGTTAAAGCTATTGAT
  GGTCATTCGAACATAACAGAAGCAAGTTTGAAAAGTTCCAAAATATTTGTAATTCCTGAG
  GCTAACATTCCTTTCAAAGAATCAGAACAGGCAGCAATTGTTAACTATGTGAAACAAGGT
  GGCAATGTTGTCTTTATTTCAGATCATTACAATGCTGACCGAAATTTAAATCGTATTGAT
  TCATCGGAGGCAATGAATGGTTATCGACGTGGAGCATATGAAGATATGTCGAAAGGTATG
  AATGCAGAAGAAAAAAGCTCTACTGCAATGCAAGGTGTGAAAAGTTCAGATTGGTTATCT
  ACAAACTTTGGCGTACGTTTTCGATATAATGCACTAGGTGATTTAAATACGAGCAATATT
  GTTTCTTCAAAAGAAAGTTTCGGTATTACTGAAGGTGTGAAATCTGTCTCTATGCATGCC
  GGATCGACATTAGCAATTACTAATCCAGAGAAAGCAAAAGGTATTGTGTATACACCAGAA
  CAATTGCCAGCGAAAAGTAAATGGTCACATGCTGTAGATCAAGGTATTTATAATGGTGGC
  GGTAAAGCAGAAGGCCCCTATGTAGCAATTTCTAAAGTTGGAAAAGGTAAAGCAGCATTT
  ATCGGTGATTCATCACTTGTGGAAGATAGTTCGCCCAAATATGTAAGAGAAGATAATGGA
  GAAAAGAAGAAAACATATGATGGTTTTAAAGAACAAGACAACGGTAAGCTATTAAATAAT
  ATAACGGCTTGGATGTCTAAAGATAGTGATGGGAAATCACTTAAGGCGAGTGGACTAACA
  TTAGATACAAAGACTAAGTTGCTTGATTTTGAACGACCAGAGCGTTCAACTGAGCCTGAA
  AAAGAGCCATGGTCACAACCGCCGAGTGGTTATAAATGGTATGACCCAACAACATTTAAA
  GCAGGTAGTTATGGCAGTGAAAAAGGCGCGGATCCTCAGCCAAACACACCAGATGATCAT
  ACGCCACCAAATCAGAACGTAAAAATATCATTTGATATCCCGCAAAATGTTTCTGTAAAT
  GAGCCATTTGAAGTGACAATACATTTAAAAGGATTTGAAGCAAATCAAACACTTGAAAAT
  CTTAGAGTTGGTATTTACAAAGAAGGCGGACGTCAAATCGGACAATTTTCAAGTAAAGAT
  AACGATTATAACCCACCAGGTTACAGTACTTTGCCAACAGTTAAAGCAGATGAAAACGGA
  AATGCTACAATTAAGATCAATGCTAAAGTACTTGAAAGTATGGAAGGTTCAAAGATTCGT
  TTAAAACTCGGTGACAAAACCTTGATTACAACAGACTTCAAATAA
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  1545
  

⊟Protein

⊟General

• locus tag: SA_RS00865 [old locus tag: SA0139 ]
• symbol: SA_RS00865
• description: hypothetical protein
• length: 514
• theoretical pI: 6.98396
• theoretical MW: 56154.1
• GRAVY: -0.681907

⊟Function

• TIGRFAM:
  gliding-associated putative ABC transporter substrate-binding component GldG (TIGR03521; HMM-score: 15.1)
• TheSEED: see SA0139
• PFAM:
  no clan defined ABC_transp_aux; ABC-type uncharacterized transport system (PF09822; HMM-score: 30.7)
  and 3 more
  Glutaminase_I (CL0014) ThuA; Trehalose utilisation (PF06283; HMM-score: 22)
  no clan defined SOXp; SOX transcription factor (PF12336; HMM-score: 16.4)
  DUF4350; Domain of unknown function (DUF4350) (PF14258; HMM-score: 12.3)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 3.33
  • Cellwall Score: 3.33
  • Extracellular Score: 3.33
  • Internal Helices: 0
• LocateP:
• SignalP: Signal peptide SP(Sec/SPI) length 27 aa
  • SP(Sec/SPI): 0.987636
  • TAT(Tat/SPI): 0.004184
  • LIPO(Sec/SPII): 0.005656
  • Cleavage Site: CS pos: 27-28. SLA-IT. Pr: 0.8530
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI: 446648262 NCBI
• RefSeq: WP_000725608 NCBI
• UniProt: see SA0139

⊟Protein sequence

• MKKIYKSLTVSAIVATVSLSALPQSLAITHESQPTKQQRTVLFDRSHGQTAGAADWVSDGAFSDYADSIQKQGYDVKAIDGHSNITEASLKSSKIFVIPEANIPFKESEQAAIVNYVKQGGNVVFISDHYNADRNLNRIDSSEAMNGYRRGAYEDMSKGMNAEEKSSTAMQGVKSSDWLSTNFGVRFRYNALGDLNTSNIVSSKESFGITEGVKSVSMHAGSTLAITNPEKAKGIVYTPEQLPAKSKWSHAVDQGIYNGGGKAEGPYVAISKVGKGKAAFIGDSSLVEDSSPKYVREDNGEKKKTYDGFKEQDNGKLLNNITAWMSKDSDGKSLKASGLTLDTKTKLLDFERPERSTEPEKEPWSQPPSGYKWYDPTTFKAGSYGSEKGADPQPNTPDDHTPPNQNVKISFDIPQNVSVNEPFEVTIHLKGFEANQTLENLRVGIYKEGGRQIGQFSSKDNDYNPPGYSTLPTVKADENGNATIKINAKVLESMEGSKIRLKLGDKTLITTDFK

⊟Experimental data

• experimentally validated: data available for COL, NCTC8325
• protein localization: data available for COL
• quantitative data / protein copy number per cell:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: data available for NCTC8325

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications