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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS03945 [old locus tag: SA0692 ]
  • pan locus tag?: SAUPAN002641000
  • symbol: SA_RS03945
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS03945 [old locus tag: SA0692 ]
  • symbol: SA_RS03945
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 791176..791490
  • length: 315
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (791176..791490) NCBI
  • BioCyc: SA_RS03945 BioCyc
  • MicrobesOnline: see SA0692

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGCCTAAAGTTTATGGTTCATTAATCGATACTGAAACACGCTGTCGCCATTATTTTACC
    GAAGAAGATATTATTGCTATTAAATTTAAATGTTGTAATAAATACTATCCATGCTATAAG
    TGCCATAATGAGTTTGAAAAGCACGCCATTAAGCGTTGGTCTGAGCCTTCATTTAACGAA
    AAAGCAATCTTATGCGGTGTATGCAAACACGAATTAACAATCAATGAATATATGATGGTA
    GAGCGTTGTCCAAATTGCCAATCTCGGTTTAACAATCGCTGTAAATATCACTATCATATT
    TATTTTGAAATTTAA
    60
    120
    180
    240
    300
    315

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS03945 [old locus tag: SA0692 ]
  • symbol: SA_RS03945
  • description: hypothetical protein
  • length: 104
  • theoretical pI: 8.09137
  • theoretical MW: 12723.7
  • GRAVY: -0.645192

⊟Function[edit | edit source]

  • TIGRFAM:
    MJ0042 family finger-like domain (TIGR02098; HMM-score: 11)
    and 1 more
    Genetic information processing Protein fate Protein modification and repair hydrogenase nickel insertion protein HypA (TIGR00100; HMM-score: 7.4)
  • TheSEED: see SA0692
  • PFAM:
    no clan defined zf-CHY; CHY zinc finger (PF05495; HMM-score: 46.8)
    and 5 more
    Tbcl_zf (CL0839) LIM; LIM domain (PF00412; HMM-score: 17.5)
    no clan defined Zf_2nd_IFT121; IFT121, second zinc finger domain (PF23145; HMM-score: 16.1)
    RING (CL0229) IBR_1; IBR domain (PF22191; HMM-score: 15.8)
    Zn_Beta_Ribbon (CL0167) Zn_ribbon_9; C4-type zinc ribbon domain (PF02591; HMM-score: 13.7)
    HypA; Hydrogenase/urease nickel incorporation, metallochaperone, hypA (PF01155; HMM-score: 8.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9667
    • Cytoplasmic Membrane Score: 0.0001
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0331
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.183656
    • TAT(Tat/SPI): 0.000783
    • LIPO(Sec/SPII): 0.009195
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPKVYGSLIDTETRCRHYFTEEDIIAIKFKCCNKYYPCYKCHNEFEKHAIKRWSEPSFNEKAILCGVCKHELTINEYMMVERCPNCQSRFNNRCKYHYHIYFEI

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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