From AureoWiki
Jump to navigation Jump to search

NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS05550 [old locus tag: SA0979 ]
  • pan locus tag?: SAUPAN003362000
  • symbol: SA_RS05550
  • pan gene symbol?: isdD
  • synonym:
  • product: hypothetical protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS05550 [old locus tag: SA0979 ]
  • symbol: SA_RS05550
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1108742..1109818
  • length: 1077
  • essential: no DEG other strains

Accession numbers[edit | edit source]

  • Location: NC_002745 (1108742..1109818) NCBI
  • BioCyc: G1G21-1118 BioCyc
  • MicrobesOnline: see SA0979

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGAGAAATGTTAAACAAATTGCTACAAAATCTATTATAGCTATTATTAGCTTATGTATA
    CTTACATATACAACAATGATTGGTAGCGTGTTGGCTGATGAGATAAAATATCCATCAGCC
    AAATTTAATCAACCTGAAGCAAAAGATAAAACAGAATTAACTACATCAATTTTTGATGAA
    AAGATAAAAGAGAATAAAGCGTTAGAGTTACTAATTTTTAATCAAGAAAATAAAAATGTA
    ACTGAGGAACAACAACTAGTTGACGAAAAGGCGCAATTGATTTCAGATATGACTGGTAAA
    ATTTACTTGCAAGTAAAGCTAAAAGGTCAAATAGATAAAGAACAACTTGTTTTTCAAAAT
    GACAAAAATGAAGAATTTCCTTTTGTTATAAAAGATGAAAAGGATGACACAATAGTAAGA
    ATTTTAATTGAACAGCATATGGATAAAATCAATATGCATGTTAAAACGTTGGCTGAAAAG
    AAAAATCTAGATAACAAAGAAATGGTGTATTCTATTCATTTTAAAGAGAAAAAAGTACAA
    CATGATGATGCAAAAGAAGTGCCTTCAAAACATCAAAATCAAGAAAATAATCAAGATCAG
    CTTAAAAAAGATATTGATGACAAAAAAGATAGTCAAAAATCAGATACTAAGGAAAGACGT
    ACTAGCCTTTTTACTGAAAAAGGATTAAATGATATTCCTGTACAAAAAGATAAAGTGCAA
    CAAGACAGTAATAAAAAGATTGAAAATGAGCGACCTAAAGCATCAGGTACATTAAAAGTT
    GAAAATAGCCCTCCAACAATAAAAAAGGTTGAAAATAATCACAAAGAGCAACCGAAACAT
    AAAGATGAAAAATCAAAAAAGGAAAAGAAAAAAGTAGTTGAAAAAGAAAAAGCGTTACCA
    GCTTTTAATAGAGATGATGATAGCAAGAATAGTAGTCAATTATCTAGTGATATTAAAGAA
    CTTGATGAACCAAATCATAAAAAGCAATATATGTTATTTGCAGCTGGCATTGTGTTAGCA
    ACTATTTTACTTATTTCGGCACATTTATACAGCAGAAAGAGAGGTAACCAAGTTTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1077

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SA_RS05550 [old locus tag: SA0979 ]
  • symbol: SA_RS05550
  • description: hypothetical protein
  • length: 358
  • theoretical pI: 9.39959
  • theoretical MW: 41393.9
  • GRAVY: -0.984358

Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA0979
  • PFAM:

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 2
  • LocateP:
  • SignalP: Signal peptide SP(Sec/SPI) length 32 aa
    • SP(Sec/SPI): 0.985108
    • TAT(Tat/SPI): 0.001277
    • LIPO(Sec/SPII): 0.001536
    • Cleavage Site: CS pos: 32-33. VLA-DE. Pr: 0.9724
  • predicted transmembrane helices (TMHMM): 2

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MRNVKQIATKSIIAIISLCILTYTTMIGSVLADEIKYPSAKFNQPEAKDKTELTTSIFDEKIKENKALELLIFNQENKNVTEEQQLVDEKAQLISDMTGKIYLQVKLKGQIDKEQLVFQNDKNEEFPFVIKDEKDDTIVRILIEQHMDKINMHVKTLAEKKNLDNKEMVYSIHFKEKKVQHDDAKEVPSKHQNQENNQDQLKKDIDDKKDSQKSDTKERRTSLFTEKGLNDIPVQKDKVQQDSNKKIENERPKASGTLKVENSPPTIKKVENNHKEQPKHKDEKSKKEKKKVVEKEKALPAFNRDDDSKNSSQLSSDIKELDEPNHKKQYMLFAAGIVLATILLISAHLYSRKRGNQV

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]