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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS05780 [old locus tag: SA1016 ]
  • pan locus tag?: SAUPAN003435000
  • symbol: SA_RS05780
  • pan gene symbol?: —
  • synonym:
  • product: permease

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS05780 [old locus tag: SA1016 ]
  • symbol: SA_RS05780
  • product: permease
  • replicon: chromosome
  • strand: -
  • coordinates: 1150342..1151289
  • length: 948
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1150342..1151289) NCBI
  • BioCyc: SA_RS05780 BioCyc
  • MicrobesOnline: see SA1016

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGAGACTTCAAAAAGCACCTCTAGTAACGTCAGGACTAGTCTTAGGATTATTAGGCCTG
    GGTAATCTATTAAAAGACTTATCTCTTACTTTAAACGCTGTTTGCGGAATCTTTGCTTTC
    TTGATTTGGATTCACCTTTTATGTACTATGATCAAATATTTTAATAATGTGAAAGAACAA
    TTAAACAGTCCTCTAGTTTCATCAGTGTTCACAACATTTTTCATGTCTGGCTTTTTAGGT
    ACTACTTATTTAAATACATTTTTTAGTAACATAACTTTTATCAATAGCTTAATAACGCCT
    ATTTGGATTTTATGCCTTGTGGGAATTATGACGCATATGATTATTTTTTCAATAAAATAT
    TTAAAAGATTTTTCACTTGAAAATGTTTATCCTTCGTGGACTGTACTTTTTATTGGTATT
    GCTATCGCAGGATTGACGGCACCCGTTAGCGGATGTTTTTTCATAGGTCAATTAACAGTA
    ATATATGGCTTTGTAGCTACTTGTATTGTCTTACCTATTGTTTTCAAGCGATTAAAAGCA
    TTTCCATTGCAGACGTCAATCAAACCGAACACATCGACAATTTGTGCACCATTTTCTTTA
    GTCGCTGCAGCATATGTTATAGCCTTTCCTAAGGCGAATGCTTTTATCGTAATTATATTT
    TTAATATTAGCTCAAATATTTTATTTTTATATCATTATACAATTGCCTAAATTACTAAAA
    GAACCTTTTTCGCCCGTATTTTCAGCTTTCACATTCCCTTTAGTAATCTCAGCAACTGCT
    TTAAAGAACAGTTTGCCTGTACTTATGTTTCCAGATATTTGGAAAGGTCTTTTGTTTATC
    GAAGTGTTATTAGCCACTGTAATAGTACTTAGAGTCTTTATAGGATATCTTCACTTCTTT
    TTAAAAAAGGAAAATCAAGATAAATTTCTTCGTAATGCGTCTCAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    948

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS05780 [old locus tag: SA1016 ]
  • symbol: SA_RS05780
  • description: permease
  • length: 315
  • theoretical pI: 9.88786
  • theoretical MW: 35236.4
  • GRAVY: 1.03048

⊟Function[edit | edit source]

  • TIGRFAM:
    undecaprenyl-phosphate glucose phosphotransferase (TIGR03023; EC 2.7.8.-; HMM-score: 3.6)
  • TheSEED: see SA1016
  • PFAM:
    no clan defined SLAC1; Voltage-dependent anion channel (PF03595; HMM-score: 59.6)
    and 1 more
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 7.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.029806
    • TAT(Tat/SPI): 0.000796
    • LIPO(Sec/SPII): 0.047632
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGCFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKENQDKFLRNASQ

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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