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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS07565 [old locus tag: SA1335 ]
  • pan locus tag?: SAUPAN004037000
  • symbol: SA_RS07565
  • pan gene symbol?: rnz
  • synonym:
  • product: ribonuclease Z

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS07565 [old locus tag: SA1335 ]
  • symbol: SA_RS07565
  • product: ribonuclease Z
  • replicon: chromosome
  • strand: -
  • coordinates: 1541418..1542338
  • length: 921
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (1541418..1542338) NCBI
  • BioCyc: SA_RS07565 BioCyc
  • MicrobesOnline: see SA1335

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGAAGTTACATTTTTTGGAACGAGTGCAGGTTTGCCTACAAAAGAGAGAAATACACAA
    GCAATCGCCTTAAATTTAGAACCATATTCCAATTCCATATGGCTTTTCGACGTTGGTGAA
    GGTACACAGCACCAAATTTTACATCATGCAATCAAATTAGGAAAAGTGACACATATATTT
    ATTACTCATATGCATGGCGATCATATTTTTGGTTTGCCAGGATTACTTTCTAGTCGTTCT
    TTTCAGGGCGGTGAACAGAAGCCGCTTACATTGGTTGGACCAAAAGGAATTAAAGCATAT
    GTGGAAATGTCTATGAATTTATCAGAGTCACATTTAAACTATCCAATTACATATATTGAA
    ATCGATGATCATCTGACATATCATCATGATGGTTTTACTGTAGAGGCGCATTTACTTAAT
    CATGGTATTCCATCATATGGATATAGAGTAATGGCACCTGAAACTACAGGTACAATCAAT
    GTTGAAGCGTTAAAAAACATTGGTCTTGAACCAGGTCCTAAATATCAAGAAGTAAAATCT
    CATGATACATTTGAACATAATGGTCAAGTTTATCAATCAAAAGATTTTAGAGGTGAGTCC
    AAACAGGGTCCAGTTGTAGCAATTTTTGGTGATACAAAACCATGTTCTAATGAACGTGTG
    ATTTCTAGAGATGCTGATGTGATGGTACATGAAGCGACCTATATAGATGGTGAAAAGCAT
    TTAGCCAACAATTATCATCATAGCCATATTGAAGACGTATTTGCATTGATAAAAGAAGCC
    AATGTTAAACGTACGTTGATTACACATTTGAGCAATCGCTATAATACAGAAGATATAAAT
    GAAATTTATCAAATATTGATACAAAATGAAGATACACCTAATTTTAATTTTGTAAAAGAT
    TTTGATAGTTTTAAAGTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    921

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS07565 [old locus tag: SA1335 ]
  • symbol: SA_RS07565
  • description: ribonuclease Z
  • length: 306
  • theoretical pI: 6.22105
  • theoretical MW: 34582.5
  • GRAVY: -0.430065

⊟Function[edit | edit source]

  • reaction:
    EC 3.1.26.11?  ExPASy
    Ribonuclease Z Endonucleolytic cleavage of RNA, removing extra 3' nucleotides from tRNA precursor, generating 3' termini of tRNAs. A 3'-hydroxy group is left at the tRNA terminus and a 5'-phosphoryl group is left at the trailer molecule
  • TIGRFAM:
    Genetic information processing Transcription RNA processing ribonuclease Z (TIGR02651; EC 3.1.26.11; HMM-score: 337.4)
    and 5 more
    Genetic information processing Transcription RNA processing ribonuclease BN (TIGR02649; EC 3.1.-.-; HMM-score: 251.8)
    Genetic information processing Transcription RNA processing ribonuclease Z, Thermotoga type (TIGR02650; EC 3.1.26.11; HMM-score: 56.4)
    Cellular processes Cellular processes Detoxification hydroxyacylglutathione hydrolase (TIGR03413; EC 3.1.2.6; HMM-score: 15.1)
    Unknown function Enzymes of unknown specificity quinoprotein relay system zinc metallohydrolase 2 (TIGR04559; EC 3.-.-.-; HMM-score: 12.8)
    phosphonate metabolism protein PhnP (TIGR03307; HMM-score: 12.1)
  • TheSEED: see SA1335
  • PFAM:
    Metallo-HOrase (CL0381) Lactamase_B_2; Beta-lactamase superfamily domain (PF12706; HMM-score: 54.3)
    and 4 more
    Lactamase_B_4; tRNase Z endonuclease (PF13691; HMM-score: 33)
    Lactamase_B; Metallo-beta-lactamase superfamily (PF00753; HMM-score: 31.7)
    no clan defined MBF2; Transcription activator MBF2 (PF15868; HMM-score: 14)
    GAF (CL0161) HrcA; HrcA protein C terminal domain (PF01628; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: Zn2+
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.007937
    • TAT(Tat/SPI): 0.000348
    • LIPO(Sec/SPII): 0.001189
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQHQILHHAIKLGKVTHIFITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSMNLSESHLNYPITYIEIDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPKYQEVKSHDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNERVISRDADVMVHEATYIDGEKHLANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINEIYQILIQNEDTPNFNFVKDFDSFKV

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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