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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS09380 [old locus tag: SA1660 ]
- pan locus tag?: SAUPAN004772000
- symbol: SA_RS09380
- pan gene symbol?: cbf1
- synonym:
- product: 3'-5' exoribonuclease YhaM
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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901ATGAGAAATATAGAGAATCTAAATCCCGGAGATTCAGTTGATCACTTTTTCTTAGTGCAT
AAAGCTACACAGGGTGTAACAGCACAAGGTAAAGATTATATGACATTACATTTGCAAGAT
AAAAGTGGTGAAATTGAAGCGAAATTTTGGACGGCTACAAAAAATGATATGGCAACAATC
AAGCCTGAAGAAATTGTACATGTTAAAGGTGACATCATAAACTATCGCGGAAATAAACAG
ATGAAAGTCAACCAAATTAGACTAGCGACAACTGAAGATCAATTAAAAACAGAACAATTT
GTAGATGGTGCACCTTTATCACCGGCAGAAATACAAGAAGAGATTTCTCATTATTTGCTA
GATATTGAAAATGCTAATTTACAACGTATCACACGTCATTTATTGAAAAAATATCAAGAA
CGATTTTACACATATCCAGCTGCTAGTTCTCATCATCATAACTTTGCGAGTGGCTTAAGC
TATCATGTATTGACGATGTTACGTATTGCAAAATCAATTTGTGACATTTATCCATTGTTA
AACAAAAGTTTGTTATATAGTGGTATTATTTTGCATGATATTGGTAAAGTTAGAGAATTG
AGTGGTCCTGTTGCGACGTCGTATACAGTCGAAGGTAACTTATTAGGACACATCTCGATT
GCGAGTGATGAAGTAGTTGAAGCAGCTCGTGAATTGAACATTGAAGGAGAAGAAATCATG
TTGTTAAGACATATGATTTTATCTCATCATGGTAAGTTAGAGTATGGTTCGCCAAAACTG
CCATACTTAAAAGAAGCAGAAATTTTATGCTATATCGATAACATCGATGCTAGAATGAAT
ATGTTTGAAAAGGCTTATAAAAAAACTGACAAGGGTCAGTTTACAGATAAAATATTTGGT
CTTGAAAATCGTAGATTCTACAATCCTGAATCACTCGATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS09380 [old locus tag: SA1660 ]
- symbol: SA_RS09380
- description: 3'-5' exoribonuclease YhaM
- length: 313
- theoretical pI: 6.56818
- theoretical MW: 35778.6
- GRAVY: -0.417891
⊟Function[edit | edit source]
- TIGRFAM: CRISPR-associated endonuclease Cas3-HD (TIGR01596; EC 3.1.-.-; HMM-score: 23.3)HDIG domain (TIGR00277; HMM-score: 20.9)and 1 moreintegrating conjugative element relaxase, PFGI-1 class (TIGR03760; HMM-score: 13.9)
- TheSEED: see SA1660
- PFAM: HD_PDEase (CL0237) HD; HD domain (PF01966; HMM-score: 41.2)OB (CL0021) tRNA_anti-codon; OB-fold nucleic acid binding domain (PF01336; HMM-score: 34.9)and 1 moreHD_PDEase (CL0237) TraI_2; Putative helicase (PF07514; HMM-score: 18.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- LocateP:
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.013949
- TAT(Tat/SPI): 0.001698
- LIPO(Sec/SPII): 0.001301
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATIKPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLLDIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLLNKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIMLLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFGLENRRFYNPESLD
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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