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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS12955 [old locus tag: SA2256 ]
  • pan locus tag?: SAUPAN006028000
  • symbol: SA_RS12955
  • pan gene symbol?: cntM
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS12955 [old locus tag: SA2256 ]
  • symbol: SA_RS12955
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2533196..2534497
  • length: 1302
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2533196..2534497) NCBI
  • BioCyc: SA_RS12955 BioCyc
  • MicrobesOnline: see SA2256

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    ATGTCTAAATTATTAATGATAGGCACTGGTCCGGTCGCAATCCAATTAGCGAATATTTGC
    TATTTAAAATCAGATTATGAGATTGATATGGTTGGACGTGCCTCAACATCAGAAAAATCA
    AAACGCTTATATCAAGCGTATAAAAAAGAGAAACAATTTGAAGTCAAAATACAAAACGAG
    GCGCATCAACATCTGGAAGGTAAGTTTGAAATTAATCGTTTGTATAAAGATGTTAAAAAC
    GTTAAGGGTGAATACGAAACGGTTGTCATGGCATGCACAGCAGATGCTTATTATGACACA
    CTACAGCAATTGTCGTTAGAAACTTTGCAAAGTGTCAAACATGTCATTTTAATTTCACCG
    ACATTTGGATCGCAAATGATTGTGGAACAATTTATGTCTAAGTTCAGTCAGGATATCGAA
    GTGATTTCATTTTCAACTTATCTTGGCGATACACGTATTGTTGATAAAGAAGCACCTAAT
    CATGTGTTGACAACAGGTGTAAAAAAGAAATTGTACATGGGATCGACACATTCAAACTCA
    ACAATGTGTCAACGAATCTCTGCTTTAGCTGAGCAATTGAAGATTCAATTAGAAGTCGTT
    GAATCGCCACTGCATGCTGAAACACGTAACAGTTCGCTTTATGTGCACCCGCCACTATTT
    ATGAATGACTTTTCATTGAAAGCCATTTTCGAAGGAACGGATGTACCGGTTTATGTGTAT
    AAGTTATTTCCTGAAGGACCGATAACGATGACATTAATCCGTGAAATGCGTTTAATGTGG
    AAGGAAATGATGGCTATTTTACAAGCATTTAGAGTGCCGTCAGTCAACCTGCTTCAATTT
    ATGGTGAAGGAAAATTATCCAGTACGTCCTGAAACTTTGGATGAAGGTGATATTGAGCAT
    TTCGAAATCTTGCCAGATATCTTACAAGAATATCTGCTTTATGTAAGATACACCGCAATC
    CTCATTGATCCATTTTCACAGCCAGACGAAAACGGACATTACTTTGATTTTTCAGCTGTA
    CCATTTAAGCAAGTCTATAAAAATGAACAGGATGTTGTTCAAATTCCAAGAATGCCAAGT
    GAAGATTATTACAGAACGGCGATGATTCAGCATATTGGGAAAATGTTAGGTATCAAAACG
    CCAATGATTGATCAGTTCCTAACTCGCTATGAAGCAAGTTGCCAGGCGTACAAGGATATG
    CACCAAGATCAACAACTATCTTCTCAATTTAATACAAATCTATTTGAAGGAGATAAGGCA
    CTCGTCACAAAATTTTTGGAAATCAATAGAACGCTTTCATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1302

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS12955 [old locus tag: SA2256 ]
  • symbol: SA_RS12955
  • description: hypothetical protein
  • length: 433
  • theoretical pI: 5.81499
  • theoretical MW: 50071.4
  • GRAVY: -0.26351

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: see SA2256
  • PFAM:
    no clan defined Staph_opine_DH; Staphylopine dehydrogenase (PF10100; HMM-score: 597.2)
    and 3 more
    6PGD_C (CL0106) Octopine_DH; NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain (PF02317; HMM-score: 27.7)
    ATP-grasp (CL0179) ATP-grasp_4; ATP-grasp domain (PF13535; HMM-score: 15.5)
    LTXXQ-like (CL0515) DUF3826; Protein of unknown function (DUF3826) (PF12875; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.090104
    • TAT(Tat/SPI): 0.002864
    • LIPO(Sec/SPII): 0.055501
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MSKLLMIGTGPVAIQLANICYLKSDYEIDMVGRASTSEKSKRLYQAYKKEKQFEVKIQNEAHQHLEGKFEINRLYKDVKNVKGEYETVVMACTADAYYDTLQQLSLETLQSVKHVILISPTFGSQMIVEQFMSKFSQDIEVISFSTYLGDTRIVDKEAPNHVLTTGVKKKLYMGSTHSNSTMCQRISALAEQLKIQLEVVESPLHAETRNSSLYVHPPLFMNDFSLKAIFEGTDVPVYVYKLFPEGPITMTLIREMRLMWKEMMAILQAFRVPSVNLLQFMVKENYPVRPETLDEGDIEHFEILPDILQEYLLYVRYTAILIDPFSQPDENGHYFDFSAVPFKQVYKNEQDVVQIPRMPSEDYYRTAMIQHIGKMLGIKTPMIDQFLTRYEASCQAYKDMHQDQQLSSQFNTNLFEGDKALVTKFLEINRTLS

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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