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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13070 [old locus tag: SA2278 ]
  • pan locus tag?: SAUPAN006089000
  • symbol: SA_RS13070
  • pan gene symbol?: —
  • synonym:
  • product: (deoxy)nucleoside triphosphate pyrophosphohydrolase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13070 [old locus tag: SA2278 ]
  • symbol: SA_RS13070
  • product: (deoxy)nucleoside triphosphate pyrophosphohydrolase
  • replicon: chromosome
  • strand: -
  • coordinates: 2554471..2554863
  • length: 393
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2554471..2554863) NCBI
  • BioCyc: SA_RS13070 BioCyc
  • MicrobesOnline: see SA2278

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    ATGAAAAAAGTAATCAATGTAGTAGGAGCTATTATTTTTTCTGATAACAAAATTCTTTGT
    GCACAGAGAAGTGAAGAAATGAGTCTACCTTTAATGTGGGAATTTCCTGGCGGTAAGATT
    GAAAAGAATGAAACTGAAAAAGAAGCTTTGATTAGAGAAATTAGAGAAGAAATGAAATGT
    GATCTAATTGTTGGAGACAAAGTCATAACTACAGAACATGAATATGATTTTGGCATTGTT
    AAGTTAACAACATACAAATGTACTTTAAACAAAGAGTTACCAACTTTAACTGAACATAAG
    AGTATTGAATGGTTGTCAATAAACGAACTTGATAAATTAAATTGGGCCCCAGCGGATATA
    CCAGCCGTTAATAAAATTATGACTGAGGGATAA
    60
    120
    180
    240
    300
    360
    393

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS13070 [old locus tag: SA2278 ]
  • symbol: SA_RS13070
  • description: (deoxy)nucleoside triphosphate pyrophosphohydrolase
  • length: 130
  • theoretical pI: 4.73465
  • theoretical MW: 14895.2
  • GRAVY: -0.267692

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair mutator mutT protein (TIGR00586; EC 3.6.1.-; HMM-score: 76.8)
    and 1 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair nucleoside triphosphatase YtkD (TIGR02705; EC 3.6.1.-; HMM-score: 28.6)
  • TheSEED: see SA2278
  • PFAM:
    NUDIX (CL0261) NUDIX; NUDIX domain (PF00293; HMM-score: 53.6)
    and 3 more
    NUDIX_4; NUDIX domain (PF14815; HMM-score: 41.1)
    E-set (CL0159) PKD_3; PKD-like domain (PF16820; HMM-score: 13.2)
    NUDIX (CL0261) NUDIX_2; Nucleotide hydrolase (PF13869; HMM-score: 12)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.055445
    • TAT(Tat/SPI): 0.000797
    • LIPO(Sec/SPII): 0.028124
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKKVINVVGAIIFSDNKILCAQRSEEMSLPLMWEFPGGKIEKNETEKEALIREIREEMKCDLIVGDKVITTEHEYDFGIVKLTTYKCTLNKELPTLTEHKSIEWLSINELDKLNWAPADIPAVNKIMTEG

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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