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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus N315
  • locus tag: SA_RS13085 [old locus tag: SA2281 ]
  • pan locus tag?: SAUPAN006093000
  • symbol: SA_RS13085
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SA_RS13085 [old locus tag: SA2281 ]
  • symbol: SA_RS13085
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 2557497..2557805
  • length: 309
  • essential: no DEG other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002745 (2557497..2557805) NCBI
  • BioCyc: SA_RS13085 BioCyc
  • MicrobesOnline: see SA2281

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    ATGACCGTCAACATCGTATTTAGTATCGTATTCTGCATAAGTATGGTTATATTAGGCATT
    TATGTCGCAATAACTAAAGATTTCACACTAATTTCTTATATAAATCAAACGACCATTGCA
    GATAAACACAAGAACCAAATTGCATATATATTTACGCTATGTATCAGTTTGAGTGCAGTA
    TTTTTAATGTCTTCAATTCTATGCTTTGAATATGATTTTATTGCATTGTCATTCTTATTT
    TTAACGATAGCATTATTACTTATCGCATTATTCTACGTTTGCTTTTATAAAATCACAAAA
    TATCCATAA
    60
    120
    180
    240
    300
    309

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SA_RS13085 [old locus tag: SA2281 ]
  • symbol: SA_RS13085
  • description: hypothetical protein
  • length: 102
  • theoretical pI: 7.90952
  • theoretical MW: 11682.1
  • GRAVY: 1.34412

⊟Function[edit | edit source]

  • TIGRFAM:
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 3.4)
  • TheSEED: see SA2281
  • PFAM:
    no clan defined UspB; Universal stress protein B (UspB) (PF10625; HMM-score: 14.4)
    and 2 more
    Hypoth_1 (CL0447) DUF1304; Protein of unknown function (DUF1304) (PF06993; HMM-score: 11.2)
    no clan defined DUF2512; Protein of unknown function (DUF2512) (PF10710; HMM-score: 5.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 3
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01371
    • TAT(Tat/SPI): 0.000165
    • LIPO(Sec/SPII): 0.017508
  • predicted transmembrane helices (TMHMM): 3

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTVNIVFSIVFCISMVILGIYVAITKDFTLISYINQTTIADKHKNQIAYIFTLCISLSAVFLMSSILCFEYDFIALSFLFLTIALLLIALFYVCFYKITKYP

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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