PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003057000
• symbol^?: —
• synonym:
• description^?: general stress protein

  descriptions from strain specific annotations:

  • general stress protein
  • general stress protein 13
  • S1 RNA-binding domain-containing protein
  • S1 RNA binding domain protein, putative
  • RNA-binding S1 domain-containing protein
  • polyribonucleotide nucleotidyltransferase
  • putative S1 RNA binding domain
  • S1 RNA-binding domain protein
  • S1-type RNA-binding domain-containing protein
• strand^?: +
• coordinates^?: 3446835..3447212
• synteny block^?: BlockID0021650
• occurrence^?: in 97% of 33 strains

⊟Orthologs

COL:
SACOL0958
N315:
SA0816
NCTC8325:
SAOUHSC_00892
Newman:
NWMN_0825
USA300_FPR3757:
SAUSA300_0858
04-02981:
SA2981_0910
08BA02176:
C248_0954
11819-97:
MS7_0910
6850:
RSAU_000832
71193:
ST398NM01_0938
ECT-R 2:
ECTR2_811
ED133:
SAOV_0901
ED98:
SAAV_0916
HO 5096 0412:
SAEMRSA15_07850
JH1:
SaurJH1_0974
JH9:
SaurJH9_0955
JKD6008:
SAA6008_00908
JKD6159:
SAA6159_00814
LGA251:
SARLGA251_08730
M013:
M013TW_0874
MRSA252:
SAR0917
MSHR1132:
SAMSHR1132_08070
MSSA476:
SAS0825
Mu3:
SAHV_0950
Mu50:
SAV0955
MW2:
MW0837
RF122:
SAB0822
ST398:
SAPIG0938
T0131:
SAT0131_00987
TCH60:
HMPREF0772_12291
TW20:
SATW20_09550
USA300_TCH1516:
—
VC40:
SAVC_03950

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAK
  N315            ---------------------------------------MDDYVHNLKKFLSEGQIVKAK
  NCTC8325        -----------MRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAK
  Newman          MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAK
  USA300_FPR3757  -----------MRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAK
                                                         *********************
  
  COL             ILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKR
  N315            ILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKR
  NCTC8325        ILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKR
  Newman          ILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKR
  USA300_FPR3757  ILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKR
                  ************************************************************
  
  COL             AIRND
  N315            AIRND
  NCTC8325        AIRND
  Newman          AIRND
  USA300_FPR3757  AIRND
                  *****