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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005352000
- symbol?: kdpE
- synonym:
- description?: DNA-binding response regulator
- DNA-binding response regulator
- DNA-binding response regulator, KdpE
- DNA-binding response regulator KdpE
- KDP operon transcriptional regulatory protein
- KDP operon transcriptional regulatory protein KdpE
- response regulator transcription factor
- two-component response regulator KdpE
- KdpE protein
- KDP operon response regulator KdpE
- response regulator protein
- response regulator receiver
- response regulator receiver domain/transcriptional regulatory protein
- two component sensor protein
- Two component transcriptional regulator, winged helix family
- winged helix family two component transcriptional regulator
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 5527473..5528162
- synteny block?: BlockID0041490
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_2020 (kdpE)
08BA02176:
C248_2091 (kdpE)
11819-97:
MS7_2096
6850:
RSAU_001919 (kdpE)
71193:
ST398NM01_2121
ECT-R 2:
ECTR2_1935
ED133:
SAOV_2121
ED98:
SAAV_2134 (kdpE)
HO 5096 0412:
SAEMRSA15_19890 (kdpE)
JH1:
SaurJH1_2154
JH9:
SaurJH9_2116
JKD6008:
SAA6008_02118 (kdpE)
JKD6159:
SAA6159_01994 (kdpE)
LGA251:
SARLGA251_18820 (kdpE)
M013:
M013TW_2038
MRSA252:
SAR2167 (kdpE)
MSHR1132:
SAMSHR1132_19040
MSSA476:
SAS1984
Mu3:
SAHV_2064 (kdpE)
Mu50:
SAV2079 (kdpE)
MW2:
MW2003 (kdpE)
RF122:
SAB1964 (kdpE)
ST398:
SAPIG2121
T0131:
SAT0131_02238
TCH60:
HMPREF0772_11115 (kdpE)
TW20:
SATW20_22190 (kdpE)
USA300_TCH1516:
USA300HOU_2075 (kdpE)
VC40:
SAVC_09280
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKD
N315 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKD
NCTC8325 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKD
Newman MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKD
USA300_FPR3757 MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKD
************************************************************
COL GLCLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIA
N315 GLCLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIA
NCTC8325 GLCLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIA
Newman GLCLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIA
USA300_FPR3757 GLCLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIA
************************************************************
COL KSHQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKR
N315 KSHQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKR
NCTC8325 KSHQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKR
Newman KSHQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKR
USA300_FPR3757 KSHQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKR
************************************************************
COL IYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGYQMLQWKEK
N315 IYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGYQMLQWKEK
NCTC8325 IYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGYQMLQWKEK
Newman IYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGYQMLQWKEK
USA300_FPR3757 IYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGYQMLQWKEK
***************************************************