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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL2071 [new locus tag: SACOL_RS10835 ]
  • pan locus tag?: SAUPAN005352000
  • symbol: kdpE
  • pan gene symbol?: kdpE
  • synonym:
  • product: DNA-binding response regulator KdpE

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL2071 [new locus tag: SACOL_RS10835 ]
  • symbol: kdpE
  • product: DNA-binding response regulator KdpE
  • replicon: chromosome
  • strand: +
  • coordinates: 2136379..2137074
  • length: 696
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    ATGCAATCTAAAATATTGATAATTGAAGATGATCACGCAATCACACATTTACTTGATGTT
    GCATTAACTTTAGATTATTACAATGTAACTACAGCCGACAATGCCACACAAGCACACTTT
    AAAATTCAAATTGATAAACCAGATGTCATTTTATTAGATTTAGGTTTACCAGATAAAGAT
    GGATTATGTTTGATTTCAGAAATCAGGCAACATACTGACATTCCTATCATTGTAATAAGT
    GCAAGACAAGAAGAACAAACAATTATTCAAGCTTTAGATAACGGTGCGAATGACTATATG
    ACTAAACCTTTTAATGTTGATGAGCTTCGGGCACGAATACGAGTCATCGAGAGAATCGCT
    AAGTCACATCAAGAAACTAACATTGTATTTACTAACGGTTTGCTAAGCATCGACTTTGGC
    TCCAAATCTGTTGTTATTAATAATCAGGAGGTACATTTGACGCCAAATGAATTTAGCTTG
    TTAGAACTATTGTCAAATCATAAAGGAAAAGTACTCACTTATGAGATGATATTAAAACGA
    ATATATGGCTATGTTAATAAGACTGAAATGCCTAGTTTAAGAGTGCATATGACATCATTA
    AGACAAAAACTTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGC
    ATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    696

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL2071 [new locus tag: SACOL_RS10835 ]
  • symbol: KdpE
  • description: DNA-binding response regulator KdpE
  • length: 231
  • theoretical pI: 6.5114
  • theoretical MW: 26511.4
  • GRAVY: -0.25671

⊟Function[edit | edit source]

  • reaction:
    EC 2.7.3.-?  ExPASy
  • TIGRFAM:
    Signal transduction Regulatory functions DNA interactions phosphate regulon transcriptional regulatory protein PhoB (TIGR02154; HMM-score: 164.7)
    Signal transduction Signal transduction Two-component systems phosphate regulon transcriptional regulatory protein PhoB (TIGR02154; HMM-score: 164.7)
    and 8 more
    Signal transduction Regulatory functions DNA interactions heavy metal response regulator (TIGR01387; HMM-score: 121)
    proteobacterial dedicated sortase system response regulator (TIGR03787; HMM-score: 96.5)
    Metabolism Central intermediary metabolism Nitrogen metabolism nitrogen regulation protein NR(I) (TIGR01818; HMM-score: 82.9)
    Signal transduction Regulatory functions DNA interactions nitrogen regulation protein NR(I) (TIGR01818; HMM-score: 82.9)
    Signal transduction Signal transduction Two-component systems nitrogen regulation protein NR(I) (TIGR01818; HMM-score: 82.9)
    Signal transduction Regulatory functions DNA interactions PEP-CTERM-box response regulator transcription factor (TIGR02915; HMM-score: 51.9)
    Cellular processes Cellular processes Sporulation and germination sporulation transcription factor Spo0A (TIGR02875; HMM-score: 51.3)
    Signal transduction Signal transduction Two-component systems TMAO reductase sytem sensor TorS (TIGR02956; EC 2.7.13.3; HMM-score: 49)
  • TheSEED  :
    • DNA-binding response regulator KdpE
  • PFAM:
    CheY (CL0304) Response_reg; Response regulator receiver domain (PF00072; HMM-score: 100)
    and 3 more
    HTH (CL0123) Trans_reg_C; Transcriptional regulatory protein, C terminal (PF00486; HMM-score: 73.9)
    no clan defined DUF99; Protein of unknown function DUF99 (PF01949; HMM-score: 14.4)
    DUF1463; Protein of unknown function (DUF1463) (PF07316; HMM-score: 13.6)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002654
    • TAT(Tat/SPI): 0.000144
    • LIPO(Sec/SPII): 0.000299
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MQSKILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKSHQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGYQMLQWKEK

⊟Experimental data[edit | edit source]

  • experimentally validated: PeptideAtlas
  • protein localization: Cytoplasmic [1]
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

  1. ↑ Andreas Otto, Jan Maarten van Dijl, Michael Hecker, Dörte Becher
    The Staphylococcus aureus proteome.
    Int J Med Microbiol: 2014, 304(2);110-20
    [PubMed:24439828] [WorldCat.org] [DOI] (I p)

⊟Relevant publications[edit | edit source]

Ting Xue, Yibo You, De Hong, Haipeng Sun, Baolin Sun
The Staphylococcus aureus KdpDE two-component system couples extracellular K+ sensing and Agr signaling to infection programming.
Infect Immun: 2011, 79(6);2154-67
[PubMed:21422185] [WorldCat.org] [DOI] (I p)

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