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Summary[edit | edit source]

  • pan ID?: SAUPAN005944000
  • symbol?:
  • synonym:
  • description?: cystatin-like fold lipoprotein

      descriptions from strain specific annotations:

    • cystatin-like fold lipoprotein
    • DUF4467 domain-containing protein
    • lipoprotein
    • lipoprotein, putative
    • putative lipoprotein
  • strand?: -
  • coordinates?: 6008279..6008629
  • synteny block?: BlockID0046880
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_2347
    08BA02176:
    C248_2455
    11819-97:
    MS7_2425
    6850:
    RSAU_002248
    71193:
    ST398NM01_2461
    ECT-R 2:
    ECTR2_2269
    ED133:
    SAOV_2456c
    ED98:
    SAAV_2475
    HO 5096 0412:
    SAEMRSA15_23090
    JH1:
    SaurJH1_2483
    JH9:
    SaurJH9_2435
    JKD6008:
    SAA6008_02451
    JKD6159:
    SAA6159_02311
    LGA251:
    SARLGA251_21920
    M013:
    M013TW_2371
    MRSA252:
    SAR2500
    MSHR1132:
    SAMSHR1132_22380
    MSSA476:
    SAS2301
    Mu3:
    SAHV_2394
    Mu50:
    SAV2410
    MW2:
    MW2332
    RF122:
    SAB2290c
    ST398:
    SAPIG2461
    T0131:
    SAT0131_02601 (priA)
    TCH60:
    HMPREF0772_10777
    TW20:
    SATW20_25400
    USA300_TCH1516:
    USA300HOU_2391
    VC40:
    SAVC_10920

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MGALKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
    N315            ---MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
    NCTC8325        -------MATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
    Newman          MGALKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
    USA300_FPR3757  -------MATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKD
                           :****************************************************

    COL             ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
    N315            ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
    NCTC8325        ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
    Newman          ANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
    USA300_FPR3757  ANIYVYDKDKIIILAYKPLSN-DEVHYYAYDFSDKRVSYKQDFDSRRYYQQHDADYHEEN
                    ********************* **************************************

    COL             MTN
    N315            MTN
    NCTC8325        MTN
    Newman          MTN
    USA300_FPR3757  MTN
                    ***