From AureoWiki
Jump to navigation Jump to search

NCBI: 10-JUN-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_2044 [new locus tag: SAUSA300_RS11245 ]
  • pan locus tag?: SAUPAN005364000
  • symbol: cls
  • pan gene symbol?: cls2
  • synonym:
  • product: cardiolipin synthetase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_2044 [new locus tag: SAUSA300_RS11245 ]
  • symbol: cls
  • product: cardiolipin synthetase
  • replicon: chromosome
  • strand: +
  • coordinates: 2208379..2209938
  • length: 1560
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    ATGATATTTAAATTGCTTCATGATACAATTAATAAGATATACTACTCGTTTAAGATTTTC
    GATGGGAGGTTTCAAATGATAGAGTTATTATCCATTGCACTCAAGCATTCTAATATTATT
    TTAAATTCAATATTTATTGGTGCATTTATTTTAAACTTATTATTCGCCTTTACCATTATT
    TTCATGGAAAGACGTTCTGCCAATTCTATCTGGGCTTGGTTACTAGTCTTAGTTTTCTTG
    CCTTTATTCGGCTTCATTTTATACTTACTATTAGGACGACAAATTCAACGTGACCAAATT
    TTCAAAATTGATAAGGAAGATAAAAAAGGATTAGAGTTAATCGTTGATGAGCAATTAGCT
    GCTTTAAAAAATGAAAACTTTTCAAATTCCAATTATCAAATTGTAAAATTTAAAGAAATG
    ATTCAAATGTTGTTATATAATAACGCAGCATTTTTAACAACAGACAACGATTTAAAAATA
    TACACAGACGGCCAAGAAAAATTTGATGACCTAATACAAGACATCCGTAATGCTACTGAT
    TATATTCATTTTCAGTACTATATTATTCAAAATGATGAATTAGGTCGTACCATTTTAAAT
    GAACTTGGTAAAAAAGCGGAACAAGGTGTAGAAGTTAAAATTCTTTATGATGACATGGGT
    TCTCGTGGACTGCGTAAAAAAGGCTTACGCCCGTTTCGCAATAAAGGTGGACATGCTGAA
    GCATTTTTCCCATCAAAATTACCTTTAATTAACTTGCGTATGAACAATCGAAACCATCGA
    AAAATTGTTGTAATAGATGGGCAAATTGGATATGTTGGTGGTTTTAATGTTGGTGATGAG
    TACTTAGGTAAATCAAAAAAATTCGGCTATTGGCGAGATACGCATTTACGAATTGTCGGG
    GATGCAGTGAATGCATTGCAATTACGATTTATTCTAGATTGGAATTCACAAGCCACACGT
    GACCACATCTCCTATGATGATCGTTATTTCCCAGATGTAAATTCTGGTGGAACAATTGGC
    GTTCAAATAGCTTCTAGTGGTCCTGACGAAGAATGGGAACAGATTAAATACGGCTATTTG
    AAAATGATTTCATCTGCTAAAAAATCGATTTATATTCAATCTCCCTATTTCATACCTGAT
    CAAGCCTTTTTAGATTCTATTAAAATTGCGGCATTAGGTGGTGTTGATGTCAATATCATG
    ATTCCTAATAAACCTGACCATCCGTTTGTTTTTTGGGCTACTTTAAAAAATGCAGCATCC
    TTATTAGATGCCGGTGTTAAAGTATTTCACTACGACAATGGCTTTTTACACTCAAAAACA
    CTTGTTATAGATGATGAAATTGCAAGTGTGGGAACAGCTAATATGGACCATCGCAGTTTC
    ACATTGAATTTCGAAGTCAACGCTTTTATTTATGACCAACAAATTGCCAAAAAATTAAAA
    CAAGCTTTTATAGATGATTTAGCAGTATCTTCTGAATTAACAAAAGCACGTTATGCTAAG
    CGAAGTCTTTGGATTAAATTTAAAGAAGGTATTTCACAATTATTGTCACCTATCTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: SAUSA300_2044 [new locus tag: SAUSA300_RS11245 ]
  • symbol: Cls
  • description: cardiolipin synthetase
  • length: 519
  • theoretical pI: 9.01273
  • theoretical MW: 59638.4
  • GRAVY: -0.0917148

Function[edit | edit source]

  • reaction:
    EC 2.7.8.-?  ExPASy
    2 Phosphatidylglycerol = diphosphatidylglycerol + glycerol?
  • TIGRFAM:
    cardiolipin synthase (TIGR04265; EC 2.7.8.-; HMM-score: 821)
    and 2 more
    Genetic information processing Protein fate Protein folding and stabilization cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 10.7)
    Metabolism Energy metabolism Electron transport cytochrome c-type biogenesis protein CcmI (TIGR03142; HMM-score: 10.7)
  • TheSEED  :
    • Cardiolipin synthase, bacterial type ClsA
    Fatty Acids, Lipids, and Isoprenoids Phospholipids Glycerolipid and Glycerophospholipid Metabolism in Bacteria  Cardiolipin synthetase (EC 2.7.8.-)
  • PFAM:
    PLD (CL0479) PLDc_2; PLD-like domain (PF13091; HMM-score: 156.8)
    and 2 more
    PLDc; Phospholipase D Active site motif (PF00614; HMM-score: 58.3)
    no clan defined PLDc_N; Phospholipase_D-nuclease N-terminal (PF13396; HMM-score: 43)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.17
    • Cytoplasmic Membrane Score: 9.51
    • Cellwall Score: 0.16
    • Extracellular Score: 0.15
    • Internal Helices: 2
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.000457
    • TAT(Tat/SPI): 0.000058
    • LIPO(Sec/SPII): 0.001635
  • predicted transmembrane helices (TMHMM): 2

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MIFKLLHDTINKIYYSFKIFDGRFQMIELLSIALKHSNIILNSIFIGAFILNLLFAFTIIFMERRSANSIWAWLLVLVFLPLFGFILYLLLGRQIQRDQIFKIDKEDKKGLELIVDEQLAALKNENFSNSNYQIVKFKEMIQMLLYNNAAFLTTDNDLKIYTDGQEKFDDLIQDIRNATDYIHFQYYIIQNDELGRTILNELGKKAEQGVEVKILYDDMGSRGLRKKGLRPFRNKGGHAEAFFPSKLPLINLRMNNRNHRKIVVIDGQIGYVGGFNVGDEYLGKSKKFGYWRDTHLRIVGDAVNALQLRFILDWNSQATRDHISYDDRYFPDVNSGGTIGVQIASSGPDEEWEQIKYGYLKMISSAKKSIYIQSPYFIPDQAFLDSIKIAALGGVDVNIMIPNKPDHPFVFWATLKNAASLLDAGVKVFHYDNGFLHSKTLVIDDEIASVGTANMDHRSFTLNFEVNAFIYDQQIAKKLKQAFIDDLAVSSELTKARYAKRSLWIKFKEGISQLLSPIL

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]