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NCBI: 02-MAR-2017
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus N315
- locus tag: SA_RS09095 [old locus tag: SA1617 ]
- pan locus tag?: SAUPAN004514000
- symbol: SA_RS09095
- pan gene symbol?: —
- synonym:
- product: calcium-binding protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
⊟Accession numbers[edit | edit source]
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGAAAATAACATATAAATATAGAGGAGATTTACCTTTGAATACAGAGAACAACAAGAAT
CAAAACCAATCTGTTAAAAATTCTGAAAGACGCGGCATGTTAAAAGGATGCGGCGGTTGC
CTTATTTCTTTTATTTTATTAATAATCTTATTATCAGCCTGTTCAATGATGTTTAGTAAT
AATGACAATTCCACTAGTAATCAATCATCAAAAACGCAATTAACTCAAAAAGATGAAAAT
AAAAATGAAGATAAGCCTGAGGAAAAATCAGAAACAGCTACAGATGAGGATTTACAATCA
ACCGAAGAAGTACCCGCAAATGAAAATACTGAAAATAATCAACATGAAATTGATGAAATA
ACAACAAAAGATCAATCAGATGATGAAATTAACACACCAAACGTTGCAGAAGATAAATCA
CAAGACGACTTGAAAGATGATTTAAAAGAAAAGCAACAATCAAGTAACCATCATCAATCC
ACGCAACCTAAGACCTCACCATCAACTGAAACAAACAGGCAACAATCATTTGCTAATTGT
AAGCAACTTAGACAAGTTTATCCGAATGGTGTCACTGCCGATCATCCAGCATATCGTCCA
CATTTAGATAGAGATAAAGATAATCGTGCATGTGAACCTGATAAAAATTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SA_RS09095 [old locus tag: SA1617 ]
- symbol: SA_RS09095
- description: calcium-binding protein
- length: 216
- theoretical pI: 4.66533
- theoretical MW: 24522.4
- GRAVY: -1.40972
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Pathogenesis putative immunoglobulin-blocking virulence protein (TIGR04526; HMM-score: 16.4)Cellular processes Pathogenesis type III secretion protein, HrcV family (TIGR01399; HMM-score: 14.1)Protein fate Protein and peptide secretion and trafficking type III secretion protein, HrcV family (TIGR01399; HMM-score: 14.1)TIGR03943 family protein (TIGR03943; HMM-score: 13.3)and 9 moreCellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 11.2)Cellular processes Cell division cell division protein ZipA (TIGR02205; HMM-score: 10)Transport and binding proteins Other pleiotropic drug resistance family protein (TIGR00956; HMM-score: 7.2)Cellular processes Sporulation and germination stage III sporulation protein AF (TIGR02896; HMM-score: 5.9)Transport and binding proteins Carbohydrates, organic alcohols, and acids 3-hydroxy-3-methylglutaryl-coenzyme A reductase (TIGR00920; HMM-score: 5.3)Transport and binding proteins Cations and iron carrying compounds potassium uptake protein, Trk family (TIGR00934; HMM-score: 4.8)Transport and binding proteins Nucleosides, purines and pyrimidines nucleoside Transporter (TIGR00939; HMM-score: 4)Energy metabolism TCA cycle dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex (TIGR01347; EC 2.3.1.61; HMM-score: 3.4)Transport and binding proteins Cations and iron carrying compounds K+-dependent Na+/Ca+ exchanger (TIGR00927; HMM-score: 1.8)
- TheSEED: see SA1617
- PFAM: no clan defined Excalibur; Excalibur calcium-binding domain (PF05901; HMM-score: 46.1)and 17 moreDUF1510; Protein of unknown function (DUF1510) (PF07423; HMM-score: 17.4)Piezo_RRas_bdg; Piezo non-specific cation channel, R-Ras-binding domain (PF12166; HMM-score: 16.8)TMEM51; Transmembrane protein 51 (PF15345; HMM-score: 15.8)FAM176; FAM176 family (PF14851; HMM-score: 15.3)DUF4775; Domain of unknown function (DUF4775) (PF16001; HMM-score: 12.6)Viral_ssRNA_CP (CL0055) TT_ORF1; TT viral orf 1 (PF02956; HMM-score: 11.4)no clan defined CRA; Circumsporozoite-related antigen (CRA) (PF06589; HMM-score: 10.4)O-anti_assembly (CL0499) O-antigen_lig; O-antigen ligase like membrane protein (PF13425; HMM-score: 9.9)DMT (CL0184) Zip; ZIP Zinc transporter (PF02535; HMM-score: 9.3)AhpD-like (CL0423) PA26; PA26 p53-induced protein (sestrin) (PF04636; HMM-score: 9)no clan defined DUF4692; Domain of unknown function (DUF4692) (PF15763; HMM-score: 8.6)EphA2_TM; Ephrin type-A receptor 2 transmembrane domain (PF14575; HMM-score: 8)SLC12; Solute carrier family 12 (PF03522; HMM-score: 7.9)GPCR_A (CL0192) SID-1_RNA_chan; dsRNA-gated channel SID-1 (PF13965; HMM-score: 7.6)no clan defined SAPS; SIT4 phosphatase-associated protein (PF04499; HMM-score: 7.3)Raftlin; Raftlin (PF15250; HMM-score: 6.5)Golgi_traff (CL0456) Hid1; High-temperature-induced dauer-formation protein (PF12722; HMM-score: 6.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helix: 1
- LocateP:
- SignalP: Signal peptide LIPO(Sec/SPII) length 53 aa
- SP(Sec/SPI): 0.042232
- TAT(Tat/SPI): 0.01563
- LIPO(Sec/SPII): 0.686594
- Cleavage Site: CS pos: 53-54. LSA-CS. Pr: 0.5997
- predicted transmembrane helices (TMHMM): 1
⊟Protein sequence[edit | edit source]
- MKITYKYRGDLPLNTENNKNQNQSVKNSERRGMLKGCGGCLISFILLIILLSACSMMFSNNDNSTSNQSSKTQLTQKDENKNEDKPEEKSETATDEDLQSTEEVPANENTENNQHEIDEITTKDQSDDEINTPNVAEDKSQDDLKDDLKEKQQSSNHHQSTQPKTSPSTETNRQQSFANCKQLRQVYPNGVTADHPAYRPHLDRDKDNRACEPDKN
⊟Experimental data[edit | edit source]
- experimentally validated: data available for NCTC8325
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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