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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0840 [new locus tag: NWMN_RS04735 ]
  • pan locus tag?: SAUPAN003080000
  • symbol: NWMN_0840
  • pan gene symbol?:
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0840 [new locus tag: NWMN_RS04735 ]
  • symbol: NWMN_0840
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 933682..934071
  • length: 390
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    ATGTTACATTTACATATATTAAGTTGGGTATTAGCGATTATTTTATTTATCGCTACATAC
    TTAAACATTTCAAAAAATCAAGGCAGATCACCATTTTTCAAACCGTTGCACATGATTTTA
    CGCTTATTTATGCTGTTGACGTTAATTTCAGGATTTTGGATATTAATTCAGTCATTTATG
    AATGGCGGGGCAAATCATATGTTGCTTACATTGAAAATGCTGTGTGGTGTTGCAGTAGTT
    GGATTGATGGAAGTGTCGATTGCTAAAAGAAAGAGACATGAACAAAGTCACACAATGTTT
    TGGATAACAATCGCATTAATTATCATCACAATGGTATTAGGTGTCATTCTACCGTTAGGG
    CCTATATCAAAATTATTCGGTATTGGCTAA
    60
    120
    180
    240
    300
    360
    390

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_0840 [new locus tag: NWMN_RS04735 ]
  • symbol: NWMN_0840
  • description: hypothetical protein
  • length: 129
  • theoretical pI: 11.3868
  • theoretical MW: 14538.9
  • GRAVY: 1.03488

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    MSEP-CTERM protein (TIGR04286; HMM-score: 14.1)
    exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (TIGR03025; HMM-score: 9.9)
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 7.6)
    XrtN system VIT domain protein (TIGR04477; HMM-score: 2.7)
  • TheSEED:  
    Cofactors, Vitamins, Prosthetic Groups, PigmentsTetrapyrrolesCPO analysis Uncharacterized protein UPF0344 
  • PFAM:
    no clan definedDUF1516; Protein of unknown function (DUF1516) (PF07457; HMM-score: 122.7)
    SirB; Invasion gene expression up-regulator, SirB (PF04247; HMM-score: 23.1)
    GPCR_A (CL0192) 7TMR-DISM_7TM; 7TM diverse intracellular signalling (PF07695; HMM-score: 15)
    no clan definedDUF3681; Protein of unknown function (DUF3681) (PF12442; HMM-score: 14)
    DUF3671; Protein of unknown function (PF12420; HMM-score: 12.5)
    DUF5345; Family of unknown function (DUF5345) (PF17280; HMM-score: 11.2)
    DUF805; Protein of unknown function (DUF805) (PF05656; HMM-score: 10.7)
    DUF2304; Uncharacterized conserved protein (DUF2304) (PF10066; HMM-score: 8.7)
    PalH; PalH/RIM21 (PF08733; HMM-score: 7.7)
    DUF5467; Family of unknown function (DUF5467) (PF17555; HMM-score: 7.6)
    DUF2206; Predicted membrane protein (DUF2206) (PF09971; HMM-score: 7)
    DUF5373; Family of unknown function (DUF5373) (PF17343; HMM-score: 7)
    DUF4231; Protein of unknown function (DUF4231) (PF14015; HMM-score: 7)
    DUF202; Domain of unknown function (DUF202) (PF02656; HMM-score: 6.9)
    Ninjurin; Ninjurin (PF04923; HMM-score: 6.8)
    DUF1345; Protein of unknown function (DUF1345) (PF07077; HMM-score: 6.4)
    DUF5090; Domain of unknown function (DUF5090) (PF17009; HMM-score: 6.2)
    DUF4131; Domain of unknown function (DUF4131) (PF13567; HMM-score: 6)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 4
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.143
    • Ymax_pos: 11
    • Cmax: 0.233
    • Cmax_pos: 27
    • Smax: 0.275
    • Smax_pos: 4
    • Smean: 0.199
    • D: 0.165
  • predicted transmembrane helices (TMHMM): 4

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MLHLHILSWVLAIILFIATYLNISKNQGRSPFFKPLHMILRLFMLLTLISGFWILIQSFMNGGANHMLLTLKMLCGVAVVGLMEVSIAKRKRHEQSHTMFWITIALIIITMVLGVILPLGPISKLFGIG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]