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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_0914 [new locus tag: NWMN_RS05120 ]
  • pan locus tag?: SAUPAN003247000
  • symbol: NWMN_0914
  • pan gene symbol?: menH
  • synonym:
  • product: hypothetical protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_0914 [new locus tag: NWMN_RS05120 ]
  • symbol: NWMN_0914
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1012703..1013506
  • length: 804
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGACACATTATAAATTTTATGAAGCAAACGTTGAGACCAATCAAGTTTTAGTATTTCTG
    CATGGATTTCTTAGCGACAGCCGTACTTATCATAATCACATCGAAAAATTTACTGATAAC
    TATCATGTCATCACTATAGACTTACCAGGCCATGGCGAAGATCAGTCTTCAATGGATGAA
    ACGTGGAATTTTGATTATATTACGACGTTGTTAGACCGAATTTTAGATAAATATAAAGAT
    AAATCAATAACATTGTTTGGATATTCAATGGGTGGGCGTGTTGCATTATATTATGCAATT
    AATGGTCACATCCCTATATCTAATTTGATATTAGAAAGTACGTCACCAGGTATTAAAGAA
    GAAGCAAATCAATTGGAACGCCGTCTTGTTGATGATGCACGTGCTAAAGTATTAGACATA
    GCAGGTATTGAATTATTTGTTAATGATTGGGAAAAGTTGCCATTATTTCAATCGCAACTA
    GAATTACCAGTTGAAATACAACATCAAATAAGACAACAACGATTGTCTCAATCGCCACAT
    AAAATGGCCAAAGCATTAAGAGATTATGGTACAGGTCAAATGCCAAACTTATGGCCGCGC
    CTGAAAGAAATTAAAGTACCAACATTAATATTAGCTGGAGAATATGATGAAAAATTTGTA
    CAGATTGCGAAAAAAATGGCAAATTTAATTCCTAATAGTAAATGTAAATTAATTTCTGCT
    ACAGGTCATACAATTCATGTGGAAGATAGTGATGAATTTGATACAATGATATTAGGATTT
    TTAAAGGAGGAGCAAAATGACTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    804

Protein[edit source | edit]

Protein Data Bank: 2XMZ

General[edit source | edit]

  • locus tag: NWMN_0914 [new locus tag: NWMN_RS05120 ]
  • symbol: NWMN_0914
  • description: hypothetical protein
  • length: 267
  • theoretical pI: 5.55003
  • theoretical MW: 30784.8
  • GRAVY: -0.409738

Function[edit source | edit]

  • reaction:
    EC 4.2.99.20?  ExPASy
    2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase5-enolpyruvoyl-6-hydroxy-2-succinylcyclohex-3-ene-1-carboxylate = (1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate + pyruvate
  • TIGRFAM:
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersMenaquinone and ubiquinone2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (TIGR03695; EC 4.2.99.20; HMM-score: 300.5)
    MetabolismEnergy metabolismOther3-oxoadipate enol-lactonase (TIGR02427; EC 3.1.1.24; HMM-score: 83.3)
    proline-specific peptidase (TIGR01250; HMM-score: 78.7)
    MetabolismEnergy metabolismPhotosynthesisputative magnesium chelatase accessory protein (TIGR03056; HMM-score: 61.6)
    pyrimidine utilization protein D (TIGR03611; HMM-score: 60.2)
    MetabolismBiosynthesis of cofactors, prosthetic groups, and carriersBiotinpimelyl-[acyl-carrier protein] methyl ester esterase (TIGR01738; EC 3.1.1.85; HMM-score: 55.9)
    2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (TIGR03343; EC 3.7.1.-; HMM-score: 39.8)
    MetabolismEnergy metabolismOtherpoly(3-hydroxyalkanoate) depolymerase (TIGR02240; EC 3.1.1.-; HMM-score: 39.1)
    MetabolismFatty acid and phospholipid metabolismBiosynthesispoly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit (TIGR01836; HMM-score: 22.1)
    MetabolismAmino acid biosynthesisAspartate familyhomoserine O-acetyltransferase (TIGR01392; EC 2.3.1.31; HMM-score: 19.5)
    Plasmodium subtelomeric family (TIGR01607; HMM-score: 12.3)
  • TheSEED:  
    Cofactors, Vitamins, Prosthetic Groups, PigmentsQuinone cofactorsMenaquinone and Phylloquinone Biosynthesis 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) 
    Quinone cofactorsMenaquinone biosynthesis from chorismate via 1,4-dihydroxy-2-naphthoate 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20) 
  • PFAM:
    AB_hydrolase (CL0028) Abhydrolase_1; alpha/beta hydrolase fold (PF00561; HMM-score: 96.7)
    Abhydrolase_6; Alpha/beta hydrolase family (PF12697; HMM-score: 64.8)
    Hydrolase_4; Serine aminopeptidase, S33 (PF12146; HMM-score: 61.9)
    Thioesterase; Thioesterase domain (PF00975; HMM-score: 25.5)
    Ndr; Ndr family (PF03096; HMM-score: 23.7)
    Lipase_3; Lipase (class 3) (PF01764; HMM-score: 19.9)
    DUF2974; Protein of unknown function (DUF2974) (PF11187; HMM-score: 19.2)
    PGAP1; PGAP1-like protein (PF07819; HMM-score: 19)
    Abhydrolase_2; Phospholipase/Carboxylesterase (PF02230; HMM-score: 18.3)
    DUF915; Alpha/beta hydrolase of unknown function (DUF915) (PF06028; HMM-score: 17.6)
    Esterase; Putative esterase (PF00756; HMM-score: 16.7)
    DLH; Dienelactone hydrolase family (PF01738; HMM-score: 15.7)
    Cystatin (CL0121) Staphopain_pro; Staphopain proregion (PF14731; HMM-score: 15.4)
    AB_hydrolase (CL0028) UPF0227; Uncharacterised protein family (UPF0227) (PF05728; HMM-score: 14.4)
    DUF900; Alpha/beta hydrolase of unknown function (DUF900) (PF05990; HMM-score: 13.2)
    no clan definedDUF2183; Uncharacterized conserved protein (DUF2183) (PF09949; HMM-score: 12.9)
    AB_hydrolase (CL0028) BAAT_C; BAAT / Acyl-CoA thioester hydrolase C terminal (PF08840; HMM-score: 12.8)
    Chlorophyllase2; Chlorophyllase enzyme (PF12740; HMM-score: 10.9)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.126
    • Ymax_pos: 37
    • Cmax: 0.116
    • Cmax_pos: 37
    • Smax: 0.183
    • Smax_pos: 32
    • Smean: 0.111
    • D: 0.12
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MTHYKFYEANVETNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGEDQSSMDETWNFDYITTLLDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKLPLFQSQLELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKKMANLIPNSKCKLISATGHTIHVEDSDEFDTMILGFLKEEQND

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]