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NCBI: 06-JUL-2013

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1467 [new locus tag: NWMN_RS08270 ]
  • pan locus tag?: SAUPAN004145000
  • symbol: NWMN_1467
  • pan gene symbol?: ccpN
  • synonym:
  • product: CBS domain-containing protein

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_1467 [new locus tag: NWMN_RS08270 ]
  • symbol: NWMN_1467
  • product: CBS domain-containing protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1635316..1635855
  • length: 540
  • essential: unknown other strains

Accession numbers[edit | edit source]

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    TTGAATTTAACAAGAGCAACGCTTAGACCAGATTTAGCGATATTAACAATGTCAGGTTTT
    TTAGAAGCGCGTCCCCGAGTTGGATATTATTATTCAGGTAAATCAAAAGGCAAATTTTTT
    AATGAAAAACTTCGACAATTTGAGGTTAAGGACTATATGTCTCAACCTGTTGTGCTAAGA
    GAGAATACAACAGTTTATGACGCTATTTGTACAATTTTTTTAGAAGATGTAAGTACATTA
    TTTATTATTAATGAAGATAACGATTTTGTTGGTGTGTGTTCAAGAAAAGATTTATTAAGA
    GCTTCAATGATTGGAGCAGATATTCATAAAGTACCTATCAGTGTAAATATGACACGTATG
    CCTAATGTCACTTATTTAGAGGAAAGCGAATTAGTCATATACGCAGCAGATAGAATGATT
    GAAAAAGAAATTGATTCGATTCCAATTGTAAGAAAAAAAGATAATCAAAAGTATGAAGTA
    ATTGGAAGAATTTCCAAAACAACAATAGCTAAGTTATTAGTAGCATTATATAAAGAATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_1467 [new locus tag: NWMN_RS08270 ]
  • symbol: NWMN_1467
  • description: CBS domain-containing protein
  • length: 179
  • theoretical pI: 8.61119
  • theoretical MW: 20559.8
  • GRAVY: -0.129609

Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Sugars sugar isomerase, KpsF/GutQ family (TIGR00393; HMM-score: 28.9)
    and 2 more
    Metabolism Purines, pyrimidines, nucleosides, and nucleotides Purine ribonucleotide biosynthesis inosine-5'-monophosphate dehydrogenase (TIGR01302; EC 1.1.1.205; HMM-score: 19.2)
    Metabolism Amino acid biosynthesis Serine family cystathionine beta-synthase (TIGR01137; EC 4.2.1.22; HMM-score: 14.6)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    no clan defined CBS; CBS domain (PF00571; HMM-score: 55.4)
    and 2 more
    HTH (CL0123) HTH_11; HTH domain (PF08279; HMM-score: 16.8)
    no clan defined ToxS; Trans-membrane regulatory protein ToxS (PF17323; HMM-score: 12.3)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.042219
    • TAT(Tat/SPI): 0.004567
    • LIPO(Sec/SPII): 0.02861
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MNLTRATLRPDLAILTMSGFLEARPRVGYYYSGKSKGKFFNEKLRQFEVKDYMSQPVVLRENTTVYDAICTIFLEDVSTLFIINEDNDFVGVCSRKDLLRASMIGADIHKVPISVNMTRMPNVTYLEESELVIYAADRMIEKEIDSIPIVRKKDNQKYEVIGRISKTTIAKLLVALYKE

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]