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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1560 [new locus tag: NWMN_RS08745 ]
  • pan locus tag?: SAUPAN004278000
  • symbol: abrB
  • pan gene symbol?:
  • synonym:
  • product: ammonia monooxygenase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1560 [new locus tag: NWMN_RS08745 ]
  • symbol: abrB
  • product: ammonia monooxygenase
  • replicon: chromosome
  • strand: -
  • coordinates: 1726291..1727358
  • length: 1068
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGATATATAGAAATAATTTCATTGTGTTCGTTTTATCATTTTTTATTAGTATTCTACTG
    TATTCATCGCACGTATTACTTCCATTTATGTTTGGTCCTATTATCGCATCAATCATTTGT
    GTAAAAGTTTTCAAACTTGATATTAAATGGCCATTCTTACTTAGTGAATTAGGTATTGTA
    CTATTAGGTGTGCAAATCGGATCAACGTTTACGAAAAATGTCGTTATGGATATTAAAAAC
    AATTGGCTTTCGATTATTGTTGTATCTATTTCGATATTATTAATTGCAATAGTAATGGCA
    TTTGTTTTTAAAAAAATTGCACGTATTAATACAGAAACAGCTATTTTAAGTGTTATACCA
    GGAGCACTAACACAAATGCTGGTCATGGCTGAACAAGACAAACGTGCTAATTTGTTAGTT
    GTTAGCTTAACGCAAACATCACGAATTATATTTGTTGTTGTTTTAGTACCGTTCATTTCA
    TATTTTTTTCATGATGGTAACATGCATGCGAATGGAAAGTTAACAAAAGTCTTGCCTTTA
    TCACAAGTATTAAACATAGGGCAAATAGTTATTTTAGCGATAGCTATCTTTATAGTTTAT
    CTAATTATGTCTAAAATAAAGTTTCCAACATTTCAATTATTAGCACCACTCATTGTATTA
    ATTGTTTGGAATTTTTCTACAGGTTTAACATTTACACTAGATCATTGGTTGTTGAACATG
    GCACAACTAATATATATGATTAGAATTGGAGTTCAAATTGCGCATTTATTGTCAGATTTA
    AAAGGTAGACTAGCAATCGCAATTACAATTCAAAATATTATGTTGATAATTGGTGCGCTA
    ATCATGGTTTATATCATACATTTCTTTGATAATAATCCTATTAATGAATTGTTTCTTGGT
    GCAGCACCAGGAGGGGTTAATCAGATAGTTTTAGTTGCATTAGCTACTGGTGCCGATGTT
    GCTATGATTACGAGTTATCATATTTTCCGAATCTTTTTCATCCTATTTATTATTGCACCA
    GGAATTAATTACTTTTTAAAATATCGTTCGAATAAGCGTGAAGATTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1068

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1560 [new locus tag: NWMN_RS08745 ]
  • symbol: AbrB
  • description: ammonia monooxygenase
  • length: 355
  • theoretical pI: 10.1975
  • theoretical MW: 39863.1
  • GRAVY: 1.08366

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    membrane protein AbrB duplication (TIGR03082; HMM-score: 238.7)
  • TheSEED:  
    FIG01107906: hypothetical protein 
  • PFAM:
    Membrane_trans (CL0142) AbrB; Transition state regulatory protein AbrB (PF05145; HMM-score: 257)
    CPA_AT (CL0064) Asp-Al_Ex; Predicted Permease Membrane Region (PF06826; HMM-score: 22.9)
    Actin_ATPase (CL0108) BcrAD_BadFG; BadF/BadG/BcrA/BcrD ATPase family (PF01869; HMM-score: 13.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -0.5
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.121
    • Ymax_pos: 11
    • Cmax: 0.125
    • Cmax_pos: 28
    • Smax: 0.195
    • Smax_pos: 3
    • Smean: 0.149
    • D: 0.132
  • predicted transmembrane helices (TMHMM): 10

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MIYRNNFIVFVLSFFISILLYSSHVLLPFMFGPIIASIICVKVFKLDIKWPFLLSELGIVLLGVQIGSTFTKNVVMDIKNNWLSIIVVSISILLIAIVMAFVFKKIARINTETAILSVIPGALTQMLVMAEQDKRANLLVVSLTQTSRIIFVVVLVPFISYFFHDGNMHANGKLTKVLPLSQVLNIGQIVILAIAIFIVYLIMSKIKFPTFQLLAPLIVLIVWNFSTGLTFTLDHWLLNMAQLIYMIRIGVQIAHLLSDLKGRLAIAITIQNIMLIIGALIMVYIIHFFDNNPINELFLGAAPGGVNQIVLVALATGADVAMITSYHIFRIFFILFIIAPGINYFLKYRSNKRED

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]