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NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1819 [new locus tag: NWMN_RS10450 ]
  • pan locus tag?: SAUPAN004896000
  • symbol: NWMN_1819
  • pan gene symbol?: ptpA
  • synonym:
  • product: low molecular weight phosphotyrosine protein phosphatase

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1819 [new locus tag: NWMN_RS10450 ]
  • symbol: NWMN_1819
  • product: low molecular weight phosphotyrosine protein phosphatase
  • replicon: chromosome
  • strand: +
  • coordinates: 2026849..2027313
  • length: 465
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    ATGGTAGATGTAGCATTTGTCTGTCTTGGCAATATATGTCGTTCTCCAATGGCAGAAGCA
    ATCATGCGACAAAGACTTAAAGACAGAAATATTCATGATATTAAAGTACATTCAAGAGGT
    ACTGGTAGCTGGAATTTAGGAGAGCCACCTCATGAAGGTACACAAAAAATTCTCAACAAA
    CACAATATTCCATTTGATGGCATGATTAGTGAATTATTCGAAGCGACAGATGATTTTGAT
    TACATTGTGGCTATGGATCAAAGTAACGTTGATAATATTAAATCTATCAATCCTAATCTT
    AAGGGACAATTGTTCAAACTGTTAGAATTTAGTAATATGGAAGAGAGTGATGTACCAGAT
    CCATACTACACGAATAATTTTGAAGGTGTATACGACATGGTATTATCATCTTGTGATAAT
    TTAATAGACTACATCGTAAAAGATGCAAATTTGAAAGAGGGGTAG
    60
    120
    180
    240
    300
    360
    420
    465

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1819 [new locus tag: NWMN_RS10450 ]
  • symbol: NWMN_1819
  • description: low molecular weight phosphotyrosine protein phosphatase
  • length: 154
  • theoretical pI: 4.40403
  • theoretical MW: 17490.7
  • GRAVY: -0.396753

Function[edit source | edit]

  • TIGRFAM:
    Cellular processesCellular processesDetoxificationarsenate reductase (thioredoxin) (TIGR02691; EC 1.20.4.-,3.1.3.48; HMM-score: 21.3)
    and 1 more
    Cellular processesCellular processesDetoxificationarsenate reductase, glutathione/glutaredoxin type (TIGR02689; EC 1.20.4.1; HMM-score: 14.8)
  • TheSEED:  
    CBSS-176280.1.peg.1561 FIG133424: Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) 
  • PFAM:
    Phosphatase (CL0031) LMWPc; Low molecular weight phosphotyrosine protein phosphatase (PF01451; HMM-score: 123)
    and 1 more
    no clan definedWSN; Domain of unknown function (PF02206; HMM-score: 16.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.251
    • Ymax_pos: 21
    • Cmax: 0.243
    • Cmax_pos: 21
    • Smax: 0.353
    • Smax_pos: 17
    • Smean: 0.233
    • D: 0.244
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor: SigB regulon [1] [2] other strains
    SigB(sigma factor)controlling a large regulon involved in stress/starvation response and adaptation
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

  1. Bettina Schulthess, Dominik A Bloes, Patrice François, Myriam Girard, Jacques Schrenzel, Markus Bischoff, Brigitte Berger-Bächi
    The σB-dependent yabJ-spoVG operon is involved in the regulation of extracellular nuclease, lipase, and protease expression in Staphylococcus aureus.
    J. Bacteriol.: 2011, 193(18);4954-62
    [PubMed:21725011] [WorldCat.org] [DOI] (I p)
  2. Markus Bischoff, Paul Dunman, Jan Kormanec, Daphne Macapagal, Ellen Murphy, William Mounts, Brigitte Berger-Bächi, Steven Projan
    Microarray-based analysis of the Staphylococcus aureus sigmaB regulon.
    J. Bacteriol.: 2004, 186(13);4085-99
    [PubMed:15205410] [WorldCat.org] [DOI] (P p)

Relevant publications[edit source | edit]