From AureoWiki
Jump to: navigation, search
Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1888 [new locus tag: NWMN_RS10865 ]
  • pan locus tag?: SAUPAN005048000
  • symbol: NWMN_1888
  • pan gene symbol?:
  • synonym:
  • product: phage tail tape measure protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1888 [new locus tag: NWMN_RS10865 ]
  • symbol: NWMN_1888
  • product: phage tail tape measure protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2101579..2106108
  • length: 4530
  • essential: unknown other strains

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    4201
    4261
    4321
    4381
    4441
    4501
    ATGGGAGAAAGAATAAAAGGTTTATCTATAGGTTTGGATTTAGATGCAGCAAATTTAAAT
    AGATCATTTGCAGAAATCAAACGAAACTTTAAAACTTTAAATTCTGACTTAAAATTAACC
    GGTAACAACTTCAAATATACCGAAAAATCAACTCATAGTTACAAACAAAGGATTAAAGAA
    CTTGATGGAACTATCACAGGTTATAAGAAAAACGTTGATGATTTAGCCAAGCAATATGGC
    AAGGTATCTCAAGAACAGGGCGAAAACAGCGCGGAAGCTCAAAAATTACGACAAGAATAT
    AACAAACAAGCAAATGAGCTGAATTTTTTAGAAAAAGAACTAGAAAAAACAACAACTGAG
    TTTGAAGAGTTCAAAAAAGCTCAAGTTGAAGCTCAAAGAATGGCAGAAAGTGGCTGGGGA
    AAAACCAGTAAAGTTTTTGAAAGTATGGGACCTAAATTAACAAAAATGGGTGATGGTTTA
    AAATCCATTGGTAAAGGTTTGATGATTGGTGTAACTGCACCTGTTTTAGGTATTGCAGCA
    GCATCAGGAAAAGCTTTTGCAGAAGTTGATAAAGGTTTAGATACAGTTACCCAAGCAACA
    GGAGCAACCGGCGGAGAGCTTAAGAAGTTGCAGAATTCATTTAAAGATGTTTATGGCAAC
    TTTCCAGCAGACGCTGAGACTGTAGGCGGTGTTTTAGGGGAAGTTAACACAAGGTTAGGT
    TTCACTGGCAAAGAACTTGAGAGTGCCACAGAGTCATTCTTGAAATTTAGTCACATAACA
    GGTTCTGACGGCGTACAAGCCGTTCAATTAATTACGCGTGCAATGGGTGATGCAGGTATT
    GAAGCTGATGAGTATCAAAGTGTACTTGATATGGTAGCGAAAGCAGCACAGGCTAGCGGT
    ATAAGTGTTGATACATTAGCTGATAGCATTACTAAATACGGTGCTCCAATGAGGGCTATG
    GGCTTTGAGATGAAAGAATCAATCGCTTTATTCTCTCAATGGGAGAAATCAGGTGTTAAT
    ACTGAAATAGCCTTCAGTGGTTTGAAAAAAGCTATATCCAATTGGGGTAAAGCGGGTAAA
    GACCCAAGAGAAGAATTTAAGAAGACATTAGCAGAAATTGAAAGGACACCGGATATAGCT
    AGCGCAACAAGTTTAGCGATTGAAGCATTTGGTGCAAAAGCAGGTCCTGATTTAGCAGAT
    GCTATTAAAGGCGGTCGCTTTAGTTACCAAGAGTTCTTAAAAACTATCGAAGATTCGCAA
    GGAACGGTCAATCAGACATTTAAAGATTCTGAAAGTGGCTCCGAAAGATTTAAAGTAGCA
    ATGAATAAACTTAAATTAGTAGGTGCTGATGTATGGGCTTCTATTGAAAGTGCGTTTGCT
    CCAGTCATGGAAGAATTAATCAAAAAGCTATCTGTAGCAGTTGATTGGTTTTCAAGTTTA
    AGTGATGGATCTAAAAGGTCGATTGTTATATTCGGTGGTATTGCTGCTGCAATTGGTCCT
    GTAGTTTTTGGATTAGGTGCATTCATAAGCACAATTGGCAACGCAGTAACTGTATTAGCT
    CCATTATTAGCTAGTATTGTAAAGGCTGGCGGATTGATTAGTTTTTTATCAACTAAAGTG
    CCTATTTTAGGAACAGTCTTCACAGCATTAACTGGTCCAATTGGTATCGTGTTAGGTGTA
    CTGGCTGGTTTAGCAGTCGCATTTACAATAGCTTATAAGAAATCTGAAACATTCAGAAAT
    TTTGTTAATGGTGCAATTAACAGTGTTAAACAAACGTTTAGTAATTTCATTCAATTTATC
    CAACCTTTCATTGATTCCGTTAAAAACGTCTTTAAACAAGCGGTTTCAGCAATCGTTGAT
    TTCGCTAAAGATATTTGGAGTCAAATTAATGGATTCTTTAATGAAAACGGAATTTCTATT
    GTTCAAGCGCTTCAAAATATATGCAATTTTATCAAAGCTATATTTGAATTTATCTTAAAT
    TTTGTAATTAAACCAATCATGTTTGCGATTTGGCAAGTGATGCAATTTATTTGGCCGGCG
    GTTAAAGCCTTGATTGTCAGTACTTGGGAGAATATAAAAGGAGTAATACAAGGTGCTTTA
    AATATCATACTTGGCTTTATTAAGTTCTTTTCAAGTTTATTCACTGGTAATTGGCGAGGT
    GTTTGGGACGGTATTGTGATGATACTAAAAGGCACTGTGCAGTTAATTTGGAATTTAATA
    CAACTGTGGTTTGTAGGTAAGATTCTAGGTGTTGTTAGATACTTTGGTGGATTGCTTAAA
    GGTTTAATATCCGGTATCTGGGGTGTTATCAAAGGTATTTTCACAAAATCATTATCTGCA
    ATTTGGAATGCAACGAAAAGTATTTTTGGTTTCTTATACAATAGTGTTAAATCTATTTTC
    ACTAATATGAAAAACTGGTTATCTAGTACGTGGAATAATATCAAAAGCAATACCGTCGGC
    AAGGCTCATTCGTTATTTACGGGTGTAAGGTCTAAATTCACAAGTTTATGGAATGCGACG
    AAAGATATATTTACTAAATTAAGAAATTGGATGTCAAACATCTGGAACTCTATTAAAGAT
    AACACGGTAGGTATAGCGGGTCGCTTATGGGATAGAGTGCGTAACATCTTTGGAAGCATG
    CGTGACGGTTTAAAATCTATCATTAGTAAAATTAAAGATCATATCGGTGGTATGGTAGAC
    GCTGTTAAAAGAGGTCTTAATAAATTAATTGAAGGTTTAAACTGGGTCGGTGGTAAGTTG
    GGTATGGACAAAATACCGAAGTTACACACTGGTACTGAACATACACATACTACTACAAGA
    TTAGTTAAGAACGGTAAGATTGCACGTGACACATTCGCTACAGTTGGGGATAAGGGACGC
    GGAAATGGTCCAAATGGTTTCAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTA
    ATCACACCAAATACAGATACTACGGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGG
    GCACAAACTTATTCAATGTTAAACGGAACGCTTCCGAGATTTAGTTTAGGTACTATGTGG
    AAAGATATTAAATCTGGTGCATCATCGGCATTTAACTGGACAAAAGATAAAATAGGTAAA
    GGTACCAAATGGCTTGGCGATAAAGTTGGCGATGTTTTAGATTTTATGGAAAATCCAGGC
    AAACTTTTAAATTATATACTTGAAGCTTTTGGAATTGATTTCAATTCTTTAACTAAAGGT
    ATGGGAATTGCAGGCGACATAACAAAAGCTGCATGGTCTAAGATTAAGAAAAGTGCTACT
    GATTGGATAAAAGAAAATTTAGAAGCTATGGGCGGTGGCGATTTAGTCGGTGGAATATTA
    GACCCTGACAAAATTAATTATCATTATGGACGTACCGCAGCTTATACCGCTGCAACTGGA
    AGACCATTTCATGAAGGTGTCGATTTTCCATTTGTATATCAAGAAGTTAGAACGCCGATG
    GGTGGCAGACTTACAAGAATGCCATTTATGTCTGGTGGTTATGGTAATTATGTAAAAATT
    ACTAGTGGCGTTATCGATATGCTATTTGCGCATTTGAAAAACTTTAGCAAATCACCACCT
    AGTGGCACGATGGTAAAGCCCGGTGATGTTGTTGGTTTAACTGGTAATACCGGATTTAGT
    ACAGGACCACATTTACATTTTGAAATGAGGAGAAATGGAAGACATTTTGACCCTGAACCA
    TATTTAAGGAATGCTAAGAAAAAAGGTAGGTTATCAATTGGTGGCGGTGGCGCTACTTCT
    GGAAGTGGTGCAACTTATGCCAGCCGAGTAATCCGACAAGCACAAAGTATTTTAGGAGGA
    CGTTATAAAGGTAAGTGGATTCATGACCAGATGATGCGAGTTGCAAAGCGCGAAAGTAAC
    TATCAATCAAATGCAGTGAATAATTGGGACATTAATGCTCAAAGAGGAGACCCGTCTAGA
    GGATTATTCCAAATTATCGGCTCAACTTTTAGAGCTAACGCTAAACGAGGGTACACTAAT
    TATAATAATCCAGTACATCAAGGTATCTCAGCAATGCAGTACATTGTTAGACGATATGGT
    TGGGGTGGTTTTAAACGTGCTGGTGATTACGCATATGCTACAGGTGGAAAAGTTTTTGAT
    GGTTGGTATAACTTAGGTGAAGACGGTCATCCAGAATGGATTATTCCAACAGATCCAGCT
    CGTAGAAATGATGCAATGAAGATTTTGCATTATGCAGCAGCAGAAGTAAGAGGGAAAAAA
    GCGAGTAAAAATAAGCGTCCTAGCCAATTATCAGACTTAAACGGGTTTGATGATCCTAGC
    TTATTATTGAAAATGATTGAACAACAGCAACAACAAATAGCTTTATTACTGAAAATAGCA
    CAATCTAACGATGTGATTGCAGATAAAGATTATCAGCCGATTATTGACGAATACGCTTTT
    GATAAAAAGGTGAACGCGTCTATAGAAAAGCGAGAAAGGCAAGAATCAACAAAAGTAAAG
    TTTAGAAAAGGAGGAATTGCTATTCAATGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2700
    2760
    2820
    2880
    2940
    3000
    3060
    3120
    3180
    3240
    3300
    3360
    3420
    3480
    3540
    3600
    3660
    3720
    3780
    3840
    3900
    3960
    4020
    4080
    4140
    4200
    4260
    4320
    4380
    4440
    4500
    4530

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1888 [new locus tag: NWMN_RS10865 ]
  • symbol: NWMN_1888
  • description: phage tail tape measure protein
  • length: 1509
  • theoretical pI: 10.2657
  • theoretical MW: 165439
  • GRAVY: -0.203048

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage tail tape measure protein, TP901 family, core region (TIGR01760; HMM-score: 65.3)
    two transmembrane protein (TIGR04527; HMM-score: 26.1)
    Cellular processesCellular processesCell divisionchromosome segregation protein SMC (TIGR02168; HMM-score: 24.3)
    Genetic information processingDNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02168; HMM-score: 24.3)
    Cellular processesCellular processesCell divisionchromosome segregation protein SMC (TIGR02169; HMM-score: 23.8)
    Genetic information processingDNA metabolismChromosome-associated proteinschromosome segregation protein SMC (TIGR02169; HMM-score: 23.8)
    Unknown functionEnzymes of unknown specificityquinoprotein relay system zinc metallohydrolase 2 (TIGR04559; EC 3.-.-.-; HMM-score: 13.6)
    Genetic information processingDNA metabolismDNA replication, recombination, and repairDnaD domain protein (TIGR01446; HMM-score: 13)
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsDnaD domain protein (TIGR01446; HMM-score: 13)
    Genetic information processingProtein synthesistRNA aminoacylationserine--tRNA ligase (TIGR00414; EC 6.1.1.11; HMM-score: 11.7)
    phasin (TIGR01985; HMM-score: 8.8)
    SH3 domain protein (TIGR04211; HMM-score: 8.1)
  • TheSEED:  
    Phages, Prophages, Transposable elements, PlasmidsPhages, ProphagesPhage tail proteins 2 Phage tail length tape-measure protein 
  • PFAM:
    no clan definedPhageMin_Tail; Phage-related minor tail protein (PF10145; HMM-score: 66.9)
    Hybrid (CL0105) Peptidase_M23; Peptidase family M23 (PF01551; HMM-score: 61.9)
    Lysozyme (CL0037) SLT; Transglycosylase SLT domain (PF01464; HMM-score: 25.6)
    no clan definedDUF948; Bacterial protein of unknown function (DUF948) (PF06103; HMM-score: 17.7)
    GAS; Growth-arrest specific micro-tubule binding (PF13851; HMM-score: 17.6)
    TMP_2; Prophage tail length tape measure protein (PF06791; HMM-score: 17.1)
    TPR_MLP1_2; TPR/MLP1/MLP2-like protein (PF07926; HMM-score: 16.7)
    Goodbye; fungal STAND N-terminal Goodbye domain (PF17109; HMM-score: 16)
    EsxAB (CL0352) WXG100; Proteins of 100 residues with WXG (PF06013; HMM-score: 14.4)
    no clan definedYtxH; YtxH-like protein (PF12732; HMM-score: 14.4)
    Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 14.2)
    EzrA; Septation ring formation regulator, EzrA (PF06160; HMM-score: 14)
    Laminin_I; Laminin Domain I (PF06008; HMM-score: 13.5)
    FapA; Flagellar Assembly Protein A (PF03961; HMM-score: 13.4)
    BCLiA (CL0551) APG6; Autophagy protein Apg6 (PF04111; HMM-score: 12.9)
    no clan definedDUF745; Protein of unknown function (DUF745) (PF05335; HMM-score: 12.4)
    TACC; Transforming acidic coiled-coil-containing protein (TACC) (PF05010; HMM-score: 12.1)
    TMPIT; TMPIT-like protein (PF07851; HMM-score: 11.5)
    HTH (CL0123) Mnd1; Mnd1 family (PF03962; HMM-score: 11.2)
    no clan definedSpc24; Spc24 subunit of Ndc80 (PF08286; HMM-score: 10.1)
    BLOC1_2; Biogenesis of lysosome-related organelles complex-1 subunit 2 (PF10046; HMM-score: 10)
    DUF16; Protein of unknown function DUF16 (PF01519; HMM-score: 9.8)
    tRNA_bind_arm (CL0298) Seryl_tRNA_N; Seryl-tRNA synthetase N-terminal domain (PF02403; HMM-score: 9.7)
    no clan definedIFT57; Intra-flagellar transport protein 57 (PF10498; HMM-score: 9.6)
    OmpH; Outer membrane protein (OmpH-like) (PF03938; HMM-score: 9.1)
    Phage_GPO; Phage capsid scaffolding protein (GPO) serine peptidase (PF05929; HMM-score: 8.8)
    Tho2; Transcription factor/nuclear export subunit protein 2 (PF11262; HMM-score: 7.8)
    Carbpep_Y_N; Carboxypeptidase Y pro-peptide (PF05388; HMM-score: 6.6)
    DUF4407; Domain of unknown function (DUF4407) (PF14362; HMM-score: 6.3)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 9.35
    • Cellwall Score: 0.32
    • Extracellular Score: 0.32
    • Internal Helices: 6
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular Possibility: 0.17
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.135
    • Ymax_pos: 25
    • Cmax: 0.152
    • Cmax_pos: 25
    • Smax: 0.186
    • Smax_pos: 24
    • Smean: 0.106
    • D: 0.124
  • predicted transmembrane helices (TMHMM): 6

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MGERIKGLSIGLDLDAANLNRSFAEIKRNFKTLNSDLKLTGNNFKYTEKSTHSYKQRIKELDGTITGYKKNVDDLAKQYGKVSQEQGENSAEAQKLRQEYNKQANELNFLEKELEKTTTEFEEFKKAQVEAQRMAESGWGKTSKVFESMGPKLTKMGDGLKSIGKGLMIGVTAPVLGIAAASGKAFAEVDKGLDTVTQATGATGGELKKLQNSFKDVYGNFPADAETVGGVLGEVNTRLGFTGKELESATESFLKFSHITGSDGVQAVQLITRAMGDAGIEADEYQSVLDMVAKAAQASGISVDTLADSITKYGAPMRAMGFEMKESIALFSQWEKSGVNTEIAFSGLKKAISNWGKAGKDPREEFKKTLAEIERTPDIASATSLAIEAFGAKAGPDLADAIKGGRFSYQEFLKTIEDSQGTVNQTFKDSESGSERFKVAMNKLKLVGADVWASIESAFAPVMEELIKKLSVAVDWFSSLSDGSKRSIVIFGGIAAAIGPVVFGLGAFISTIGNAVTVLAPLLASIVKAGGLISFLSTKVPILGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKAIFEFILNFVIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGALNIILGFIKFFSSLFTGNWRGVWDGIVMILKGTVQLIWNLIQLWFVGKILGVVRYFGGLLKGLISGIWGVIKGIFTKSLSAIWNATKSIFGFLYNSVKSIFTNMKNWLSSTWNNIKSNTVGKAHSLFTGVRSKFTSLWNATKDIFTKLRNWMSNIWNSIKDNTVGIAGRLWDRVRNIFGSMRDGLKSIISKIKDHIGGMVDAVKRGLNKLIEGLNWVGGKLGMDKIPKLHTGTEHTHTTTRLVKNGKIARDTFATVGDKGRGNGPNGFRNEMIEFPNGKRVITPNTDTTAYLPKGSKVYNGAQTYSMLNGTLPRFSLGTMWKDIKSGASSAFNWTKDKIGKGTKWLGDKVGDVLDFMENPGKLLNYILEAFGIDFNSLTKGMGIAGDITKAAWSKIKKSATDWIKENLEAMGGGDLVGGILDPDKINYHYGRTAAYTAATGRPFHEGVDFPFVYQEVRTPMGGRLTRMPFMSGGYGNYVKITSGVIDMLFAHLKNFSKSPPSGTMVKPGDVVGLTGNTGFSTGPHLHFEMRRNGRHFDPEPYLRNAKKKGRLSIGGGGATSGSGATYASRVIRQAQSILGGRYKGKWIHDQMMRVAKRESNYQSNAVNNWDINAQRGDPSRGLFQIIGSTFRANAKRGYTNYNNPVHQGISAMQYIVRRYGWGGFKRAGDYAYATGGKVFDGWYNLGEDGHPEWIIPTDPARRNDAMKILHYAAAEVRGKKASKNKRPSQLSDLNGFDDPSLLLKMIEQQQQQIALLLKIAQSNDVIADKDYQPIIDEYAFDKKVNASIEKRERQESTKVKFRKGGIAIQ

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]