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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1898 [new locus tag: NWMN_RS10920 ]
  • pan locus tag?: SAUPAN001841000
  • symbol: NWMN_1898
  • pan gene symbol?:
  • synonym:
  • product: phage portal protein

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1898 [new locus tag: NWMN_RS10920 ]
  • symbol: NWMN_1898
  • product: phage portal protein
  • replicon: chromosome
  • strand: -
  • coordinates: 2111283..2112470
  • length: 1188
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    ATGAGTATTCTAGAAAAGATATTTAAAACTAGGAAAGATATAACATATATGCTTGATTTA
    GATATGATAGAAGATCTATCACAACAAGCGTATGTGAAACGTTTAGCGATTGATAGTTGT
    ATTGAATTTGTTGCGCGAGCTGTCGCTCAAAGTCATTTTAAAGTATTGGAAGGTAATAGA
    ATTCAAAAGAATGATGTTTACTACAAGTTAAATATAAAACCAAATACTGACTTATCAAGC
    GATAGTTTTTGGCAACAAGTTATATATAAACTAATTTATGATAACGAGGTTTTAATCGTA
    GTAAGTGACAGCAAAGAATTACTTATCGCAGATAGCTTTTACAGAGAAGAGTACGCTTTG
    TATGATGATATATTCAAAGATGTAACGGTTAAAGATTATACTTATCAACGTACTTTCACA
    ATGCAAGAGGTCATATATTTAAAGTACAACAACAATAAAGTGACACACTTTGTAGAAAGT
    CTATTCGAAGATTACGGGAAAATATTCGGAAGAATGATAGGTGCACAATTAAAAAACTAT
    CAAATAAGAGGGATTTTGAAATCTGCCTCTAGCGCATATGACGAAAAGAATATAGAAAAA
    TTACAAGCGTTCACAAATAAATTATTCAATACTTTTAATAAAAATCAACTAGCAATCGCG
    CCTTTGATAGAAGGTTTTGATTATGAGGAATTATCTAATGGTGGTAAGAATAGTAACATG
    CCTTTTTCTGAATTGAGTGAGCTAATGAGAGATGCAATAAAAAATGTTGCGTTGATGATT
    GGTATACCTCCAGGTTTGATTTACGGAGAAACAGCTGATTTGGAAAAAAACACGCTTGTA
    TTTGAGAAGTTCTGTTTAACACCTTTATTAAAAAAGATTCAGAACGAATTAAACGCGAAA
    CTCATAACACAAAGCATGTATTTGAAAGATACAAGAATAGAAATTGTCGGTGTGAATAAA
    AAAGACCCACTTCAATATGCTGAAGCAATTGACAAACTTGTAAGTTCTGGTTCATTTACA
    AGGAATGAGGTGCGGATTATGTTAGGTGAAGAACCATCAGACAATCCTGAATTAGACGAA
    TACCTGATTACTAAAAACTACGAAAAAGCTAACAGTGGTGAAAATGATGAAAAAGAAAAA
    GATGAAAACACTTTGAAAGGTGGTGATGAAGATGAAAGCGGAGATTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1188

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1898 [new locus tag: NWMN_RS10920 ]
  • symbol: NWMN_1898
  • description: phage portal protein
  • length: 395
  • theoretical pI: 4.54973
  • theoretical MW: 45519.4
  • GRAVY: -0.45443

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
    Genetic information processingMobile and extrachromosomal element functionsProphage functionsphage portal protein, HK97 family (TIGR01537; HMM-score: 313.5)
  • TheSEED:  
    Portal protein, phage associated 
  • PFAM:
    no clan definedPhage_portal; Phage portal protein (PF04860; HMM-score: 137.7)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.119
    • Ymax_pos: 50
    • Cmax: 0.112
    • Cmax_pos: 50
    • Smax: 0.228
    • Smax_pos: 49
    • Smean: 0.087
    • D: 0.106
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MSILEKIFKTRKDITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]