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Pangenome04-0298108BA0217611819-9771193COLECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50N315NCTC8325NewmanRF122ST398T0131TCH60TW20USA300_FPR3757USA300_TCH1516VC40
NCBI: 06-JUL-2013

Summary[edit source | edit]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_1899 [new locus tag: NWMN_RS10925 ]
  • pan locus tag?: SAUPAN001376000
  • symbol: NWMN_1899
  • pan gene symbol?:
  • synonym:
  • product: phage terminase large subunit

Genome View[edit source | edit]

Gene[edit source | edit]

General[edit source | edit]

  • type: CDS
  • locus tag: NWMN_1899 [new locus tag: NWMN_RS10925 ]
  • symbol: NWMN_1899
  • product: phage terminase large subunit
  • replicon: chromosome
  • strand: -
  • coordinates: 2112486..2114147
  • length: 1662
  • essential: unknown

Accession numbers[edit source | edit]

Phenotype[edit source | edit]

  • Share your knowledge and add information here. [edit]

DNA sequence[edit source | edit]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGATTAGTAATAAATACGTTGATGAATATATAAATTTGTGGAAACAAGGAAAGATAATT
    TTAAATAAAGAAAGAATTGATCTCTTTAATTATCTACAAAAACATATATATTCACGAGAT
    GATGTATATTTTGATGAACAGAAAATCGAGGATTGTATCAAATTTATTGAAAAATGGTAT
    TTTCCAACATTACCATTTCAAAGGTTTATCATAGCTAATATATTTCTTATAGATAAAAAT
    ACAGATGAAGCTTTCTTTACAGAATTTGCTATTTTCATGGGACGTGGAGGCGGGAAAAAC
    GGTCTAATAAGTGCTATTAGTGATTTTCTTTCTACGCCCTTACACGGAGTTAAAGAATAT
    CACATCTCCATTGTTGCTAATAGTGAAGATCAAGCAAAAACATCGTTTGATGAAATCAGA
    ACCGTTTTAATGGATAACAAACGAAATAAGACGGGTAAAACGCCAAAAGCTCCTTATGAA
    GTTAGTAAAGCAAAAATAATAAACCGTGCAACTAAATCGGTTATTCGATATAACACATCA
    AACACAAAAACCAAAGACGGTGGACGTGAGGGGTGTGTTATTTTTGATGAAATTCATTAT
    TTCTTTGGTCCTGAAATGGTAAACGTCAAACGTGGTGGATTAGGTAAAAAGAAAAATAGA
    AGAACGTTTTATATAAGTACTGATGGTTTTGTTAGAGAGGGTTATATCGATGCAATGAAG
    CACAAAATTGCAAGTGTATTAAGTGGCAAGGTTAAAAATAGTAGATTGTTTGCTTTTTAT
    TGTAAGTTAGACGATCCAAAAGAAGTTGATGACAGACAGACGTGGGAAAAGGCGAACCCA
    ATGTTACATAAACCGTTATCAGAATACGCTAAAACACTGCTAAGTACGATTGAAGAAGAA
    TATAACGATTTACCATTCAACCGTTCAAATAAGCCCGAATTCATGACTAAGCGAATGAAT
    TTGCCTGAAGTTGACCTTGAAAAAGTAATAGCACCATGGAAAGAAATACTAGCGACTAAT
    AGAGAGATACCAAATTTAGATAATCAAATGTGTATTGGTGGTTTAGACTTTGCAAACATT
    CGAGATTTTGCAAGTGTAGGGCTATTATTCCGAAAAAACGATGATTACATTTGGTTAGGA
    CATTCGTTTGTAAGACAAGGGTTTTTGGATGATGTCAAATTAGAACCTCCTATTAAAGAA
    TGGGAAAAAATGGGATTATTGACCATTGTCGATGATGATGTCATTGAAATTGAATATATA
    GTTGATTGGTTTTTAAAGGCTAGAGAAAAATATGGGCTTGAAAAAGTCATAGCTGATAAT
    TATAGAACTGATATTGTAAGACGTGCGTTTGAGGATGCTGGCATAAAACTTGAAGTACTT
    AGAAATCCAAAAGCAATACATGGATTACTTGCACCACGTATCGATACAATGTTTGCGAAA
    CATAACGTAATATATGGAGACAATCCTTTGATGCGTTGGTTTACTAATAATGTTGCAGTA
    AAGGTTAAACCCGATGGTAATAAAGAATATATTAAAAAAGATGAAAATAGAAGAAAAACC
    GATGGGTTCATGGCTTTTGTTCACGCATTATATAGAGCAGACGATATAGTAGACAAAGAC
    ATGTCTAAAGCGCTTGATGCATTAATGAGTATAGATTTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1662

Protein[edit source | edit]

General[edit source | edit]

  • locus tag: NWMN_1899 [new locus tag: NWMN_RS10925 ]
  • symbol: NWMN_1899
  • description: phage terminase large subunit
  • length: 553
  • theoretical pI: 8.46683
  • theoretical MW: 64307.4
  • GRAVY: -0.45859

Function[edit source | edit]

  • reaction:
  • TIGRFAM:
  • TheSEED:  
    Phages, Prophages, Transposable elementsPhages, ProphagesPhage head and packaging Phage terminase, large subunit 
  • PFAM:
    P-loop_NTPase (CL0023) Terminase_1; Phage Terminase (PF03354; HMM-score: 143.3)
    ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 13.5)

Structure, modifications & interactions[edit source | edit]

  • domains:
  • modifications:
  • cofactors:
  • effectors:
  • protein partners:

Localization[edit source | edit]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular Possibility: 1
    • Signal Peptide Possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • Ymax: 0.088
    • Ymax_pos: 11
    • Cmax: 0.102
    • Cmax_pos: 23
    • Smax: 0.104
    • Smax_pos: 6
    • Smean: 0.077
    • D: 0.084
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit source | edit]

Protein sequence[edit source | edit]

  • MISNKYVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWYFPTLPFQRFIIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPNLDNQMCIGGLDFANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREKYGLEKVIADNYRTDIVRRAFEDAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALYRADDIVDKDMSKALDALMSIDF

Experimental data[edit source | edit]

  • experimentally validated: no data available

Expression & Regulation[edit source | edit]

Operon[edit source | edit]

Regulation[edit source | edit]

  • sigma factor:
  • regulator:

Transcription pattern[edit source | edit]

Protein synthesis (provided by Aureolib)[edit source | edit]

Protein stability[edit source | edit]

  • half-life: no data available

Biological Material[edit source | edit]

Mutants[edit source | edit]

Expression vector[edit source | edit]

lacZ fusion[edit source | edit]

GFP fusion[edit source | edit]

two-hybrid system[edit source | edit]

FLAG-tag construct[edit source | edit]

Antibody[edit source | edit]

Other Information[edit source | edit]

You are kindly invited to share additional interesting facts.

Literature[edit source | edit]

References[edit source | edit]

Relevant publications[edit source | edit]