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NCBI: 02-MAR-2017

Summary[edit | edit source]

  • organism: Staphylococcus aureus Newman
  • locus tag: NWMN_RS00190 [old locus tag: NWMN_0030 ]
  • pan locus tag?: SAUPAN000382000
  • symbol: NWMN_RS00190
  • pan gene symbol?:
  • synonym:
  • product: tRNA-dihydrouridine synthase

Genome View[edit | edit source]

Gene[edit | edit source]

General[edit | edit source]

  • type: CDS
  • locus tag: NWMN_RS00190 [old locus tag: NWMN_0030 ]
  • symbol: NWMN_RS00190
  • product: tRNA-dihydrouridine synthase
  • replicon: chromosome
  • strand: -
  • coordinates: 42682..43614
  • length: 933
  • essential: unknown other strains

Accession numbers[edit | edit source]

  • Location: NC_009641 (42682..43614) NCBI
  • BioCyc:
  • MicrobesOnline: see NWMN_0030

Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGGAAGACGTTACAGATATCGTCTTTCGACACGTTGTAAGTGAAGCAGCTAGACCGGAT
    GTGTTTTTCACTGAATTTACAAATACTGAAAGCTTTTGCCACCCTGAAGGCATACATAGT
    GTGCGCGGACGCTTAACTTTTAGTGAAGATGAACAGCCGATGGTCGCTCATATATGGGGA
    GATAAGCCAGAACAGTTCCGTGAAACGAGTATTCAATTAGCTAAAATGGGCTTTAAAGGC
    ATAGACTTAAATATGGGATGTCCTGTAGCAAATGTTGCTAAAAAGGGTAAGGGTTCCGGC
    TTAATCTTAAGACCTGACGTTGCTGCCGAAATTATTCAAGCGACTAAAGCAGGTGGGCTT
    CCGGTAAGTGTTAAAACACGCCTTGGCTACTATGAAATCGATGAATGGAAAGATTGGTTG
    AAGCACGTCTTCGAACAAGACATTGCCAATTTATCTATTCATCTTCGTACACGTAAAGAA
    ATGAGTAAAGTAGATGCACATTGGGAATTAATCGAAGCTATTAAAAATTTACGTGACGAA
    ATTGCACCAAATACATTGTTAACAATTAACGGTGATATTCCCGATAGAAAAACAGGACTT
    GAACTGGCAGAAAAATATGGCATTGATGGCGTCATGATTGGTAGAGGCATTTTCCACAAT
    CCATTCGCTTTTGAAAAAGAACCACGCGAACACACAAGCAAGGAACTATTAGATCTATTG
    AGATTGCATTTATCATTGTTTAACAAATATGAAAAAGATGAAATACGACAATTCAAGAGC
    TTGCGTAGATTCTTTAAAATCTATGTGCGTGGCATAAGAGGCGCTAGCGAACTTCGACAT
    CAATTGATGAACACACAATCAATTGCAGAAGCACGAGCACTACTCGATGAATTTGAAGCC
    CAAATGGACGAAGACGTTAAAATTGAATTATAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    933

Protein[edit | edit source]

General[edit | edit source]

  • locus tag: NWMN_RS00190 [old locus tag: NWMN_0030 ]
  • symbol: NWMN_RS00190
  • description: tRNA-dihydrouridine synthase
  • length: 310
  • theoretical pI: 6.14661
  • theoretical MW: 35562.5
  • GRAVY: -0.393548

Function[edit | edit source]

  • reaction:
    EC 1.3.1.-?  ExPASy
  • TIGRFAM:
    Unknown function General putative TIM-barrel protein, nifR3 family (TIGR00737; HMM-score: 152.5)
    and 3 more
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA dihydrouridine synthase A (TIGR00742; EC 1.-.-.-; HMM-score: 83.7)
    dihydroorotate dehydrogenase family protein (TIGR01037; EC 1.3.-.-; HMM-score: 19.3)
    Unknown function General putative TIM-barrel protein (TIGR00736; HMM-score: 15.6)
  • TheSEED: data available for COL, N315, NCTC8325, USA300_FPR3757
  • PFAM:
    TIM_barrel (CL0036) Dus; Dihydrouridine synthase (Dus) (PF01207; HMM-score: 160.8)
    and 3 more
    GT-B (CL0113) Glycos_transf_1; Glycosyl transferases group 1 (PF00534; HMM-score: 16.1)
    TIM_barrel (CL0036) AP_endonuc_2; Xylose isomerase-like TIM barrel (PF01261; HMM-score: 13.8)
    no clan defined MPS2; Monopolar spindle protein 2 (PF17060; HMM-score: 12.8)

Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors: FMN
  • effectors:

Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.005793
    • TAT(Tat/SPI): 0.000477
    • LIPO(Sec/SPII): 0.001135
  • predicted transmembrane helices (TMHMM): 0

Accession numbers[edit | edit source]

Protein sequence[edit | edit source]

  • MEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMVAHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQATKAGGLPVSVKTRLGYYEIDEWKDWLKHVFEQDIANLSIHLRTRKEMSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFHNPFAFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEARALLDEFEAQMDEDVKIEL

Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell: data available for COL
  • interaction partners:

Expression & Regulation[edit | edit source]

Operon[edit | edit source]

Regulation[edit | edit source]

  • regulator:

Transcription pattern[edit | edit source]

Protein synthesis (provided by Aureolib)[edit | edit source]

Protein stability[edit | edit source]

  • half-life: no data available

Biological Material[edit | edit source]

Mutants[edit | edit source]

Expression vector[edit | edit source]

lacZ fusion[edit | edit source]

GFP fusion[edit | edit source]

two-hybrid system[edit | edit source]

FLAG-tag construct[edit | edit source]

Antibody[edit | edit source]

Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

Literature[edit | edit source]

References[edit | edit source]

Relevant publications[edit | edit source]