NCBI: 02-MAR-2017

⊟Summary

• organism: Staphylococcus aureus Newman
• locus tag: NWMN_RS01395 [old locus tag: NWMN_0252 ]
• pan locus tag^?: SAUPAN001233000
• symbol: NWMN_RS01395
• pan gene symbol^?: —
• synonym:
• product: PTS sugar transporter subunit IIC

⊟Gene

⊟General

• type: CDS
• locus tag: NWMN_RS01395 [old locus tag: NWMN_0252 ]
• symbol: NWMN_RS01395
• product: PTS sugar transporter subunit IIC
• replicon: chromosome
• strand: +
• coordinates: 306964..307914
• length: 951
• essential: unknown

⊟Accession numbers

• Location: NC_009641 (306964..307914) NCBI
• MicrobesOnline:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
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  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  
  ATGCGTGCCATGGGAGCATTAGCTAATGCAGCAATCGCAACATTTTTAGTGGAAGCATTT
  AATAAATATGTTGGTGGCGAAGTATTCGGTATTAAATTTTTAGAAGAGCTAGGAGACGCT
  GCGGGAGGTCTAGGTGGTGTCGCTGCCGCTGGATTAACAGCATTAGCTATCGGTGTGTCA
  CCAGTATATGCATTAGTTATAGCAGCCGCGTGCGGTGGTATGGATTTATTACCAGGTTTC
  TTTGCGGGTTATATGATTGGATATGTGATGAAATATACAGAGAAATATGTGCCGGATGGT
  GTCGACTTAATTGGATCGATTGTCATCTTAGCGCCATTAGCTCGTCTTATTGCAGTATTA
  TTAACGCCAGTAGTGAATAGTACATTGATTCGAATTGGTGATATTATCCAAAGTAGTACG
  AATACGAATCCAATTATCATGGGTATCATTTTAGGTGGTATTATTACGGTTGTCGGCACA
  GCGCCATTGAGTTCAATGGCATTGACAGCATTATTAGGTTTAACGGGTGTACCTATGGCT
  ATTGGTGCCATGGCAGCATTTAGTTCGGCATTTATGAATGGGACGCTATTCCATCGCTTA
  AAATTAGGTGATCGTAAGTCTACGATTGCAGTAAGTATTGAACCTTTATCACAAGCAGAT
  ATTGTATCAGCCAATCCAATTCCAATCTATATTACAAATTTCTTTGGTGGTGCGATTGCT
  GGTTTAATTATTGCTATGTCAGGTTTAATTAACGATGCGACAGGTACAGCTACACCGATT
  GCAGGATTTTTAGTTATGTTTGGATTTAATCATCCGACGACAATTGTGATTTATGGTGTA
  GTAATGGCGATTGTAGGTGCGCTTGCAGGTTATCTTGGTTCAATTGTATTTAAAAAATAT
  CCAATTGTTACTAAGCAAGACATGATTAATCGAGGTGCAGTAGACGCATAG
  60
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  420
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  540
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  951
  

⊟Protein

⊟General

• locus tag: NWMN_RS01395 [old locus tag: NWMN_0252 ]
• symbol: NWMN_RS01395
• description: PTS sugar transporter subunit IIC
• length: 316
• theoretical pI: 6.52236
• theoretical MW: 32309.2
• GRAVY: 0.952215

⊟Function

• TIGRFAM:
• TheSEED:
• PFAM:
  PTS_EIIC (CL0493) PTS_EIIC_2; Phosphotransferase system, EIIC (PF13303; HMM-score: 219.8)
  and 1 more
  no clan definedHCV_NS4a; Hepatitis C virus non-structural protein NS4a (PF01006; HMM-score: 13.3)

⊟Structure, modifications & interactions

• domains:
• modifications:
• cofactors:
• effectors:
• protein partners:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 8
• LocateP:
• SignalP: no predicted signal peptide
  • Ymax: 0.175
  • Ymax_pos: 11
  • Cmax: 0.142
  • Cmax_pos: 65
  • Smax: 0.418
  • Smax_pos: 1
  • Smean: 0.291
  • D: 0.22
• predicted transmembrane helices (TMHMM): 8

⊟Accession numbers

• GI:
• RefSeq: WP_011446984 NCBI
• UniProt:

⊟Protein sequence

• MRAMGALANAAIATFLVEAFNKYVGGEVFGIKFLEELGDAAGGLGGVAAAGLTALAIGVSPVYALVIAAACGGMDLLPGFFAGYMIGYVMKYTEKYVPDGVDLIGSIVILAPLARLIAVLLTPVVNSTLIRIGDIIQSSTNTNPIIMGIILGGIITVVGTAPLSSMALTALLGLTGVPMAIGAMAAFSSAFMNGTLFHRLKLGDRKSTIAVSIEPLSQADIVSANPIPIYITNFFGGAIAGLIIAMSGLINDATGTATPIAGFLVMFGFNHPTTIVIYGVVMAIVGALAGYLGSIVFKKYPIVTKQDMINRGAVDA

⊟Experimental data

• experimentally validated: no data available

⊟Expression & Regulation

⊟Operon

• NWMN_RS01395 no polycistronic organisation predicted

⊟Regulation

• sigma factor:
• regulator:

⊟Transcription pattern

• S.aureus Expression Data Browser: no data available

⊟Protein synthesis (provided by Aureolib)

• Aureolib: no data available

⊟Protein stability

• half-life: no data available

⊟Other Information

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